Magnolia sinica: 131220759
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Entry
131220759 CDS
T09699
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
msin
Magnolia sinica
Pathway
msin03420
Nucleotide excision repair
msin04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
131220759
09124 Replication and repair
03420 Nucleotide excision repair
131220759
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msin04121
]
131220759
03400 DNA repair and recombination proteins [BR:
msin03400
]
131220759
Ubiquitin system [BR:
msin04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
131220759
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
131220759
TCR (transcription coupled repair) factors
Cul4-CSA complex
131220759
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
131220759
NCBI-ProteinID:
XP_058071570
LinkDB
All DBs
Position
12:1799166..1837709
Genome browser
AA seq
1089 aa
AA seq
DB search
MSVWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG
RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAETSELITRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCAKPTIVVL
YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGAGLLIPVPMPLGGVIIIGEETIVYC
SATAFKAIPTKPSITRAYGRVDADGSRYLLSDHAGFLHLLVITHEKERVTGLKIELLGET
SVASTISYLDNAFVYVGSSYGDSQLIKLNLQPDPKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPYDTFLVVS
FISETRILAMNSEDELEETEIEGFYSQAQTLFCQDAIHNQLVQVTANSVRLVSSTSRELR
HEWKSPSGFSVNVATANASQVLLATGGGHLVYLEIGDGVLTEVKHTQLEYEISCLDINPI
GENPNYSSLAAVGMWTDISVRIFSLPGLELITKEHLGGEIIPRSVLLCAFEGVSYLLCAL
GDGHLFNFLLNMNTGELSDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICH
QEQSRTFAICSLKYCQSTTDDSEMHFVRLLDDQTFEFISTYPLDTYEYGCSILSCSFTDD
TNVYYCVGTAYVLPEENEPSKGRILVFVVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI
NQKIQLYKWMLREDGSRELQSESGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG
AIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSDGATDEERGRLEVVGEYHL
GEFVNRFCHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYVFLEKLQSNLVKV
IKGVGGLSHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRSRMEEISKVMGVSVEELCK
RVEELTRLH
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtttggaattacgtggtgacggcacacaagcctacgaacgtcacgcattcctgc
gttgggaattttaccagccctcaggaactcaacctcatcattgctaaatgcacacgtatt
gagatacatctgctcactccgcagggactacagcctatgttggatgttccaatatatgga
agaattgcaacacttgagctttttcgccctcatggggaagcacaagattttctatttatt
gctacagagagatacaaattttgtgttctccaatgggatgcagagacatctgagctcatc
acgagagcaatgggagatgtttcagatcgtataggtcgccctacagacaatggacagatt
ggcataattgatcctgattgtagattaattggtcttcatctctatgatggcttattcaag
gttataccctttgacaacaaaggacagctcaaggaagcttttaatattaggcttgaagag
cttcaagttctggacatcaagtttctgtacggttgtgcaaaaccaacaattgtagttctt
taccaggataacaaggatgcacggcatgtcaaaacatatgaggttgcactcaaggacaaa
gactttgttgagggtccatggtcacagaataatcttgacaatggggctggtttgctaata
cctgttcccatgcctcttggtggtgttattattattggagaagaaacaattgtgtattgc
agtgccactgcctttaaagccattccaacaaaaccttcaattacaagagcatatgggagg
gttgatgcagatggttctcgatacttgcttagtgatcatgcaggatttttgcatttactc
gttatcacacatgagaaagagagagtgactggactcaaaattgagctattgggggaaaca
tctgttgcatcaacaatatcatatcttgataatgcatttgtgtatgtgggctcaagctat
ggagattcacagctcatcaagctaaatctccaacctgatcccaaaggctcatacgtagaa
gttcttgagaggtacgtcaaccttgggcctattgtggacttctgtgtggttgaccttgag
aggcaaggtcagggtcaagttgtgacttgctcaggagcgtataaagatggttctcttcgc
attgttcgaaatggcatagggatcaacgaacaggcatctgtagaacttcaaggcatcaaa
gggatgtggtctttgcggtcttctactgatgatccgtatgatactttcttggtcgtaagc
ttcatcagtgagacacgcattctggcgatgaattctgaggatgagttagaagaaactgag
atagaaggtttttactcccaggcacaaactttgttctgccaagatgcgatccacaatcaa
cttgtacaggttactgccaattctgtgcgtctggtcagttctacatctcgagagctgcgg
catgaatggaagtcgccttcaggattctctgttaatgtagctacagcaaatgccagtcag
gttttgttagccactgggggaggccacctagtttatctggaaataggagatggggtattg
actgaagtaaaacatacacaactggaatatgagatatcatgccttgacattaaccctata
ggtgagaatcctaattacagtagtctcgcagcagttggaatgtggactgacataagcgtt
aggattttctcccttcctggtctggaactgatcacaaaggagcatctgggcggagagatc
atccctcgctctgttcttctatgtgcgtttgaaggggtatcttacttgttatgcgccctt
ggagatgggcacctgttcaatttcctattaaacatgaacactggtgagttgtctgatagg
aagaaggtctcacttgggactcagcctataacactccgtactttctcttccaagaacacc
acccatgtgtttgctgcctcggataggccaactgttatctacagtagcaataagaaatta
ctctacagcaatgtgaatctaaaagaagtcagccatatgtgtcctttcaactctgctgct
ttccctgacagccttgcaattgctaaggaaggagaacttactattggtactattgatgac
atccaaaagcttcacatccgctcgatcccacttggagagcatgcacgtcgtatttgccat
caggaacagtcacggacattcgccatttgcagtttgaagtactgccagtccactacggat
gactctgaaatgcattttgtgcgcttgttggatgatcaaacctttgagttcatatcgacg
tatccacttgatacctacgagtatggctgttctatccttagctgttcattcacagatgat
accaatgtgtattactgcgtgggaacagcatatgtattgcctgaggagaacgaacccagc
aagggccgaatattggtttttgtagttgaagatgggaagctacagctgattgctgaaaag
gaaacaaaaggggctgtgtactctctcaacgccttcaatgggaaattgctggctgcaatc
aatcagaagattcagttgtacaagtggatgcttcgggaagacggttcacgtgagttgcaa
tctgaatctggacaccacgggcatattctcgccctgtatgttcaaacccgtggcgatttc
attgttgtcggtgatctgatgaagtccatctcgttattgatatacaagcatgaagagggt
gccatcgaggagcgtgcccgtgactacaacgccaactggatgtcggccgttgagatcctc
gacgatgatatctaccttggcgcagagaacaacttcaacctcttcactgtccgcaagaac
agtgatggcgccactgatgaggagcgcggccgccttgaggtagtgggcgagtaccacctc
ggtgagtttgtcaaccgcttctgccatggctcccttgtcatgcgcctccccgactccgat
gtaggccagatccccactgtcatctttggcactgtgaacggtgtgatcggtgtcattgcc
tcattgccccacgagcagtacgtcttcctggagaagctacagtcgaacctggtgaaggtc
atcaagggtgtgggtgggctgagccatgagcagtggcggtctttcaacaacgagaagaaa
acagtggatgcaaagaatttcttggacggggatctgatcgagtcattccttgatctcagc
cggagccggatggaagagatctcaaaggtgatgggcgtgtcggtggaggagctgtgcaag
agagtggaggagctgacgagattgcactga
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integrated database retrieval system
