Magnolia sinica: 131221364
Help
Entry
131221364 CDS
T09699
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
msin
Magnolia sinica
Pathway
msin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131221364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msin03021
]
131221364
03019 Messenger RNA biogenesis [BR:
msin03019
]
131221364
Transcription machinery [BR:
msin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131221364
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
131221364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
131221364
NCBI-ProteinID:
XP_058072595
LinkDB
All DBs
Position
12:51583372..51622483
Genome browser
AA seq
1135 aa
AA seq
DB search
MKQQNYGTAMEENPRNLGLLSIKPSNPPELVQKSSPLILDRFRVLLNQREDGIRVSSGGD
DDEDGGPPTTEEIVGMYEDVLSELTFNSKPIITDLTIIAGEQKEHGEAIADAICARIIEV
PVEQKLPSLYLLDSIVKNIGRDYVRHFAARLPEVFCQAYKQVNPSLHPAMRHLFGTWSTV
FPSSILRKIEAELQFSQPTSHQSSSFTALRPSESPSPRPGHGIHVNPKYLEARRQFEHST
AMHEVDPPRNTRMADFIERMDSDASASPKGWSGASSKFHEVQHGREVSSSAQNYGRKLTI
GHGDYEVLPTQTGARRVGSQRIEAGRLSSLIGAEWQLAASKKKLLGSSPPSRVVPARSLS
PPGDDHFARDISSVKGFEKASPSHSGFASELSRSDKDGERRGHWERNWSDDGTQKMETST
FNLSNGCDQSQPRALIDAYGNYRGKSTPDDKHPKVKQPDVNGNNSKPARAKWQNIEEDEY
DWEDMSPTLADRSRGNNLPFDSPLGSLSTRGSLRRMNDVAFEPDFRRSKWPSHVPLSLVD
ESAINIEDRMPILGSGHGLMSNKSLSRSGTQHESFSQFPGSHYPHEPWNLPHHFQSREMG
SQFPFSESGIAPSSRQRMLPLSEKALDTYVPFQRPSTIRPMMGSSSADTLNTGVPSLVTP
ASTIEQHPAQLPRSPPLPPITWPPTLNSRQPPFLSSLPQYKQIKNQFNLTDGPNNSLILS
RPQLDAADGKTLNSTKLLQLPHQQVDLISLNQPSRELAALMHPQFLKLQEVQGSFTPYAP
VQIPSHLLAQSLSHGHISGQGAVGNVVSPNPLPGVSSSSVTVHCMPNASFPVQGFALPPL
PLGPPPASSQTGPSQNTGPIFSHPPPGGPFSGLMSSLMAKGLISLTAPAAFQDSVGLEFN
AELLKVRHESVINALYVDLPRQCTTCGLRFKGQEEHSNHMDWHVTKNRMSKNRKQNPSRK
WFVSAKEWLSGAETLGTDAVPGFLPMEPVVEQREDEEMVVPADENQNVCALCGEPFEDFY
SDDTEEWMYKGAVYLNAPDGSTEGMPRSQLGPIVHAKCRSESSTIPPEDFGQDEGVDIAK
KKSVIRKLKMRNWVNSMLMREIMKRVVEEKGCEIRISVRLISSVKYLMGFYDRRL
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaacaaaattacggtactgccatggaagaaaaccctaggaatctagggcttctg
tccatcaagccgtcgaacccgccagaactcgtccaaaagtcatcgcctctgattctcgac
cgtttccgagttctcttgaatcagagggaggacggaattagggtttcttctggtggcgat
gatgacgaggatggtgggccaccgacgacggaagagatcgtggggatgtatgaggatgtc
ctgtcggagctgacgttcaattcgaagccgattattacagatcttacgattattgctggg
gagcagaaggagcatggagaggcaatcgcggacgctatctgtgctcggattattgaggtt
ccggttgagcaaaaactgccttctttatatcttcttgatagtattgtaaagaacattggt
cgtgactatgttaggcattttgctgctcgccttcctgaggttttctgtcaggcatacaag
caagttaatcctagtctgcatcctgcaatgcgtcacctttttgggacttggtccaccgtg
ttcccatcttcaatacttcgcaaaattgaggcagagctacaattttctcaacctacgagc
catcaatcgtctagttttacagcattaagaccttctgaatctccttctccccgtccaggt
catggtattcatgtaaatccaaaatacttggaggcacggcgtcagtttgaacattcaaca
gcgatgcacgaagttgatccccccaggaatacaaggatggcagatttcatagaaagaatg
gacagtgatgcttcagcgagccccaaaggatggtctggagcttcttcaaaatttcatgaa
gttcaacatggaagggaagtttcttcaagtgcacagaactatgggcgaaaactcaccatt
ggacatggtgattatgaggttctccctacacaaacgggagctagaagagtaggctcacag
aggattgaagcagggcgtctatcttcattaattggagctgaatggcaattggcagcttca
aaaaagaagcttttagggtcttcacctccttcaagagttgtgccagcaaggtctttatca
ccaccaggtgatgatcactttgcaagggatatttcttctgtaaaggggtttgaaaaagcc
tcaccatctcattctggatttgcatctgaacttagcaggagtgacaaggatggggagagg
cgtggtcactgggaaagaaactggtctgatgatggtactcagaaaatggaaacttctaca
ttcaaccttagtaatggatgtgatcagtcacagccaagagcattaattgatgcttatgga
aattacagaggaaaaagtactccagatgataagcatccgaaggtgaaacagcctgatgta
aatggcaataatagtaaaccagccagggctaaatggcagaacattgaggaagatgagtat
gattgggaggatatgagtccaactttagctgatcgtagcaggggcaataatctgccattt
gattcccctcttggaagcttaagcacaaggggcagtttaaggagaatgaatgatgtagct
tttgagcctgatttcagaagaagcaagtggcctagtcatgttccactgtcactggtcgat
gaatctgctattaacattgaagataggatgcctatcctaggatctggtcatggattgatg
agtaacaagtctctgagtcgttcaggaactcagcatgagtcattttctcagtttccgggt
tctcattaccctcatgagccttggaatttaccccaccattttcaatcaagagagatgggt
tcccaatttcccttctcagaaagtgggattgctccatcatccaggcagagaatgcttcct
ctgagtgagaaagcactagacacttacgtgccatttcagaggccctcaactattcgtcca
atgatgggatcttcaagtgctgatactctgaatacaggggttccgtcccttgtgactcct
gcatcaaccattgagcagcatccagcacaattgccgcgttcacctccactgccaccaata
acatggcctccgactcttaattctcgtcagccccccttcctcagtagccttccacaatat
aagcagattaaaaatcagttcaatttgacggatggtccaaataactctttgattttgtct
cggccgcaattagatgctgctgatggaaaaacattaaattctactaagcttctccagctg
cctcatcagcaggttgatttgatttctttaaatcagccaagccgggaactggctgctctt
atgcacccgcagtttctcaagttgcaagaggttcaaggaagttttaccccatatgctcca
gttcagattccttctcatttactggcacaatccttaagccatggacacatatcaggacag
ggtgcagttgggaatgtggtttcgcccaacccattgcctggagtatcttcttcatctgta
acagttcactgtatgccgaatgcatcttttcctgttcaggggttcgccttacctccacta
ccgctggggccacctcctgcttcatcacagacgggaccctctcaaaatacgggtcccatt
ttctctcatcctcctcctggtggtccattttctggtcttatgagttctctcatggccaag
ggtttgatctcattgacggcaccagctgcattccaggattctgtaggacttgagttcaat
gctgaacttctcaaggtgcgacatgagtcggtaataaatgcactatatgttgatcttcca
cgacaatgcacgacgtgcggattgcgtttcaaaggccaagaagagcatagtaatcacatg
gactggcatgtgacgaagaatcgcatgtctaaaaaccgtaagcagaacccttcacggaaa
tggtttgtaagtgccaaagaatggctcagtggcgcagagacattgggaactgatgctgtt
cctgggtttttgcccatggaacctgttgtagagcaaagggaggatgaggaaatggtggtt
cctgcagatgagaatcagaatgtgtgtgcattatgtggggagcctttcgaggatttttat
agtgacgatactgaagagtggatgtataaaggggccgtatacttgaatgcaccagatgga
tctacagaaggcatgcctaggtcacagttgggtccaattgtgcatgctaaatgtaggtca
gagtcttcaacgattcctcctgaagattttggacaagatgaaggggtcgacatcgccaaa
aagaagagtgtcatccgcaaattgaagatgagaaattgggtaaattccatgttaatgagg
gaaataatgaagagggtagtcgaagaaaaaggatgcgaaattagaattagtgttcggtta
atctcatctgtaaagtacctcatggggttttatgatagaaggttatga
DBGET
integrated database retrieval system
