KEGG   Magnolia sinica: 131222802
Entry
131222802         CDS       T09699                                 
Name
(RefSeq) THO complex subunit 6 isoform X1
  KO
K13175  THO complex subunit 6
Organism
msin  Magnolia sinica
Pathway
msin03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:msin00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    131222802
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msin03019]
    131222802
   03041 Spliceosome [BR:msin03041]
    131222802
Messenger RNA biogenesis [BR:msin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     131222802
Spliceosome [BR:msin03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    131222802
SSDB
Motif
Pfam: WD40 WD40_Prp19 WDR55 EIF3I WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_RIG_2nd NBCH_WD40 WD40_MABP1-WDR62_2nd WD40_RFWD3 Beta-prop_WDR90_POC16_2nd Beta-prop_Nup120_160 Ge1_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_WDR19_1st
Other DBs
NCBI-GeneID: 131222802
NCBI-ProteinID: XP_058073983
LinkDB
Position
13:11603666..11634370
AA seq 376 aa
MGGGDATNWDEDSYRRTILQERELQSQTVFRTAFAPSQNPNPDILVVASSDGSIAPYSIS
SCISTQPMRINKGRHQQSLADFSVAEPLCLLRAHNGPAYDVKFYGDGEDSLLLSCGDDGR
IQGWRWKEILDSEVLVPMQVNHLNPVLNLVNPQHKGPWGALSPIPENNAIAIDTQGGCIF
SAAGDACAYCWDVETSKVKMVFRGHSDYLHCVVARKSSNQIITGSEDGTARIWDCRSGKC
IQVINPENDPKLKKASSWVSCIAIDTSENWLVCGSGRSLSFWSLPSSECILKIDTHSPTQ
DVLFDDNHILAVGAEPFLTRFNINGIVLSQIQCAPQSAFSASLHPSGVTAVGGYGGLVDV
IAEFGSHLCTFRCRGI
NT seq 1131 nt   +upstreamnt  +downstreamnt
atgggaggaggagatgcgacgaactgggacgaggatagctacaggcgcaccatcctgcag
gagagagagctccagtctcaaaccgtcttcaggactgctttcgccccttctcaaaaccct
aaccccgacatcctcgtcgttgcctccagcgacggctccattgccccctattccatctcc
tcctgcatctccacacagccaatgcgtattaacaagggtcggcatcaacagtctctggct
gacttttcagtggcagaaccactttgcttgcttcgagcacacaatggccctgcctatgat
gtcaaattttatggtgatggggaagattctttgttgttgagctgtggagatgatggtcga
attcagggatggaggtggaaggaaattctagactcagaggtgcttgtgcccatgcaagta
aaccatttgaatccagtactcaatttggtgaaccctcaacacaaaggtccttggggtgct
ctttctccgatccctgaaaacaacgccattgccattgatacacaggggggatgcattttt
tcagccgctggtgatgcttgtgcttattgttgggatgtggaaacaagcaaggtcaaaatg
gtttttagagggcattcagactacttgcattgtgttgttgcacgtaaatcaagcaatcag
attataactggttcagaggatggaacagcacggatttgggattgcagaagtggaaaatgt
attcaagttataaatccagaaaatgatcccaagttgaagaaagcctcctcatgggtcagt
tgcattgctattgatacaagtgaaaactggttggtttgtggcagtggtaggagtttatcg
ttttggagtcttccttcatctgagtgtattttgaaaatagacactcattccccaactcaa
gatgtgttgtttgatgataatcatattctagctgttggagctgaaccttttctcacgcgt
ttcaacattaacgggatcgttctctcacagatacaatgtgctcctcagtcagcattttct
gcatctctacatccatcgggtgtgactgcagttgggggctatggaggactggtggatgtc
atagcagagtttgggagccatttatgcacattccgctgccgaggtatatga

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