Magnolia sinica: 131222833
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Entry
131222833 CDS
T09699
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
msin
Magnolia sinica
Pathway
msin03013
Nucleocytoplasmic transport
msin03015
mRNA surveillance pathway
msin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131222833
09122 Translation
03013 Nucleocytoplasmic transport
131222833
03015 mRNA surveillance pathway
131222833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131222833
03041 Spliceosome [BR:
msin03041
]
131222833
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131222833
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
131222833
Spliceosome [BR:
msin03041
]
Complex C
Other components
EJC/TREX
131222833
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
131222833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
131222833
NCBI-ProteinID:
XP_058074026
LinkDB
All DBs
Position
13:12197612..12208717
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AA seq
435 aa
AA seq
DB search
MVSSIIGMGEVKDNDAYEEELLDYEEEEEKVLDSVATKGAGESVKKGYVGIHSSGFRDFL
LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPMA
GQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVG
TPGRILALARDKDLSLKNVRHFILDECDKMLEALDMRRDVQEIFKMTPHDKQVMMFSATL
SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVV
IFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGI
DIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDI
KELPEQIDTSTYMPS
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggtctcttctataataggaatgggagaagtcaaggacaatgatgcctatgaggaagag
cttcttgattatgaagaagaggaggagaaagtccttgattctgttgccaccaaaggtgct
ggcgaatcagtcaagaagggctatgttggaattcacagctcaggattcagagatttcctt
ctaaagccggagcttcttcgagccattgtagattcaggatttgagcatccttcagaagtg
caacatgaatgcatacctcaagccatcttggggatggatgtcatctgtcaagcaaagtct
ggaatgggcaaaactgcggtttttgttctctctaccctgcagcaaatagagcccatggca
ggccaggttgctgcacttgttttatgccatacgagggaattggcttaccagatctgtcat
gagtttgagaggttcagcacctatttacctgatattaaggttgctgtattctatggcggg
gttaatataaaaattcataaggacttgcttaagaatgagtgcccgcatatcgttgttggg
acacctgggaggattctggctctagcaagagataaggatctctcattgaagaacgtgagg
cattttatccttgatgaatgtgacaaaatgcttgaagcgcttgacatgcggagagatgtg
caggagatattcaagatgacccctcatgataagcaagttatgatgttttcagcaacactc
agcaaggagatccgtcctgtttgcaagaaatttatgcaagatccaatggagatatatgtg
gatgatgaggccaagttgaccctgcatggtctcgtacagcactacattaaactgagcgag
ttggagaaaaaccgcaagttgaatgatctcctagatgcattggattttaatcaagtcgtc
attttcgttaaaagtgtgagcagagcagctgagctgaacaagctactcgtggagtgtaat
ttcccatctatctgcatccattctggaatgtcccaggaggaaaggttgacacggtataag
ggtttcaaagaggggcataaaaggattcttgtggcaacagatttggttggccgtggaatt
gacattgagcgcgtcaacattgtgatcaactacgacatgccagattctgcagacacttac
ttgcacagggttggcagggctggacgttttggtacaaaagggcttgcgattacatttgtg
tcgtctgcttctgattcagatgttcttaatcaggttcaagagaggtttgaggtggacata
aaggagctcccggagcagattgacacttctacatacatgccatcttga
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