Magnolia sinica: 131222871
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Entry
131222871 CDS
T09699
Name
(RefSeq) RNA polymerase sigma factor sigC isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
msin
Magnolia sinica
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msin03021
]
131222871
Transcription machinery [BR:
msin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
131222871
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_31
Motif
Other DBs
NCBI-GeneID:
131222871
NCBI-ProteinID:
XP_058074083
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Position
13:complement(13162769..13170463)
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AA seq
514 aa
AA seq
DB search
MVLFLGSSKQWGMVLCWTGNGLSQSNPLSSPLHQPGPTLLHCQMVIGKREDNTASCAMLS
NANVPILEDASACLASLQADSTSHFGLLMENLEKIEEIFDDSDVVRLERDILIQIGRLGA
LKIFHACLSRTVKAPDAPQQAFPLTETSKNSPEDTPVYDHMNNITVRSRKKRERKSRRER
VTEKAAKMSALSPSSKAIRDFQQLPTNPSNSRGRRHSIVRNESEMSRGVKEIANLEKVRM
SLEERIGRAASLSRWAHAAGMDVKVLQQRLHFGRYCRDKLLKSTRSLVLYIARNYRGRGL
GLEDLLQAGNMGVLQGAERFDHTRGYQFSTYVQYWVRKSMSALIARHSRGVRIPVTLNNV
INKTQKARRAFYDHHGRYPQDEEIAKLTGTSLTNVRLANKCSRVMGSTDQKVGDCIGVKF
MEITPDTLVKTPEETVMSQHMRREIHELLIGLHPRERQVLALRYGLGDGRCKSLEEVGRL
FHVTKEWIRKIEKAALTKVRKEEVQSSLNYYLEL
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggttcttttccttggctcaagcaagcaatggggcatggttttatgctggactggaaat
gggctgtctcaatccaatcctctctcctctcctcttcatcaaccaggccccactcttctt
cattgccagatggtcatcggcaagagagaggacaatacagcttcctgtgctatgttaagt
aatgccaacgtgccaattttagaggatgcttctgcatgtcttgcgagtttacaagcggat
agcacatcacatttcggtttgttaatggaaaaccttgagaaaatagaagagatctttgac
gattcggatgtggtaaggctggaaagagatattctaatacaaataggaaggctgggagct
cttaaaatattccacgcgtgtctatccaggaccgttaaggcaccagatgctcctcaacag
gccttcccactaacagaaacttccaaaaatagccctgaggacacgcctgtctatgaccac
atgaataacataaccgtccggtccagaaagaagagggagaggaaatcaaggagagaaaga
gttacagaaaaagctgcaaagatgtcagctttgtcaccatcctcaaaagcaattcgtgat
tttcaacagttgccaacaaatccatcgaactcaagaggcagacggcattcaattgttcga
aacgagtcagaaatgtcaagaggagttaaggagattgcaaacttggaaaaggtacgtatg
agtttggaagagagaattgggcgggctgcaagcttatctaggtgggcccatgcagctgga
atggacgtgaaggtgctgcagcagcgtttacattttggcaggtactgcagagataagctt
ctcaaaagtacccgttcattggtcctgtacattgcaagaaactaccgaggacggggacta
ggccttgaagatctacttcaggcggggaatatgggcgtccttcaaggtgcagaaaggttt
gatcacacgaggggataccagttctccacgtatgttcagtactgggttaggaaatcaatg
tcggcactgatagcacggcattccagaggggtccggatacctgttacattgaacaatgta
ataaataagacacagaaagctagaagagccttttatgaccaccacggaagatacccacaa
gatgaggaaatagccaagttgacgggtacgtcattaactaatgtcagacttgctaacaag
tgctcaagggtcatgggttcaactgatcagaaggtgggagactgcatcggtgtaaaattc
atggaaatcacaccagatacgttagttaagactccggaagagactgttatgagtcagcac
atgagaagagagattcatgagctcttgatcggcctgcacccaagagagaggcaagtgctg
gcgctacggtatgggcttggagacggtcggtgcaagtcacttgaagaggttgggaggctt
ttccatgtgaccaaagaatggataaggaagatagagaaagcggcattgacaaaggtaagg
aaggaggaagtgcaaagcagcttgaactactatttggaattgtag
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