Magnolia sinica: 131223451
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Entry
131223451 CDS
T09699
Name
(RefSeq) polyadenylate-binding protein 8-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
msin
Magnolia sinica
Pathway
msin03015
mRNA surveillance pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131223451
09123 Folding, sorting and degradation
03018 RNA degradation
131223451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131223451
03041 Spliceosome [BR:
msin03041
]
131223451
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131223451
mRNA cycle factors
Stress granule specific factors
131223451
Spliceosome [BR:
msin03041
]
Complex C
Other components
Complex C specific factors
131223451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_RdRP1_2
RBD_DGKtheta
Motif
Other DBs
NCBI-GeneID:
131223451
NCBI-ProteinID:
XP_058074860
LinkDB
All DBs
Position
13:31097601..31110263
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AA seq
544 aa
AA seq
DB search
MASAARPRHPTLSKIPGPSLFVGDLDPSVTERQLFNLFSRCGPIQSFRVCRDETRRSSLE
CAYVTYSNAQEASRALEVLSFTPISGKPITIMFSHQDPGIRKSGYANVRKSGYANVFIKN
LDTTTDEAGLYEIFSTFGLVLSIKVATDNSGQSKGYGFVQFSMEEDAQNAIKQLNGMLIN
NKQVYVGPFVRREERNQTDGTPKFTNVYVQNLSETTTDEDLRKVFSIYGLITSAAIMRDS
NGKNRGFGFVNFQNPDDAAAAVESTSHGEKNWYVGMAQKKAEREAELKAKYERDRMEELR
GANLYVKNLDHNINDEKLKELFSEFGTVTSCKVKLDSHGQSRGFGFVALSTPEEANRAIN
EMSGKMIGRKPLYVAVFQRKDERKARLELIQCNAHNGVEPSIAPQGPMTPSLCDVFGLPF
LPIDAARSQPVAITKLASALASASPEQQRLMLGEQLFLLVDRLEQDSAAKVTWMLLKMDQ
SELIHLIESPDALKRRVAQAMEIFQFALVTGTNLAEAMKVFQFPQVTGSDVADQLGSLSL
SLDD
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgctgcccgtcctcggcatccgacactgtccaaaatccccggaccgtctctg
tttgttggagatctggaccccagcgtaacggaacgtcagcttttcaatctcttcagccgg
tgcggtcccatacaatccttcagggtctgcagggacgagaccaggcgttcctccctcgaa
tgcgcctacgtcacttacagtaacgcccaagaagctagtcgtgccttggaggttctaagt
tttactcctatcagtggaaaaccaatcacgatcatgttctcacatcaggatcctggcatc
cggaaaagtggatatgctaatgtacggaaaagtggatatgctaatgtatttatcaagaac
ctcgacactacaacagatgaggcaggattgtatgagattttttctacctttggtcttgtc
ctttctatcaaggtggccactgataacagtggtcagtctaagggatatgggtttgtacag
ttttctatggaggaagatgcacagaatgccattaaacaacttaatggcatgctgataaat
aataaacaagtctatgttggcccttttgttcgtcgtgaagagcgaaatcaaacagatgga
acaccaaagttcactaatgtatatgtacaaaatttgtctgaaacaactaccgacgaggac
cttaggaaagtttttagtatttatggtctgattactagtgcagctattatgagggattca
aatgggaaaaatagaggctttggctttgtcaattttcagaatcctgacgatgctgctgcc
gcagttgagagtacttcccatggtgagaaaaattggtatgttggaatggctcagaagaaa
gctgaaagagaggcggaattgaaagccaaatatgagagggacagaatggaagaactgcga
ggggctaatttatatgtgaaaaatctcgatcataatatcaatgacgaaaaactcaaggag
ttgttttctgaatttggcactgtaacatcctgcaaggtcaagctggattcacatggacag
agtaggggttttggttttgtggcactttcaacccccgaagaagctaacagagctataaat
gaaatgagcgggaaaatgataggaaggaaacctctgtatgtggctgtctttcagcggaag
gatgaaagaaaggcaaggctggagttaattcaatgcaatgctcataacggggttgaacct
tcaattgcacctcagggtcccatgacgccttcgctatgtgatgtttttggtttgccattt
cttcccattgatgcagcccgatctcagcctgtagcaattacaaaacttgcctctgcttta
gcttcggcaagtcccgagcagcaaaggctgatgctaggtgaacaattgttcttacttgtt
gatcgcctggagcaagattctgcagcaaaagttacttggatgctgcttaagatggaccag
tcagagctaatccacctcatagagtccccagatgctctgaagaggagagttgctcaagct
atggaaatcttccagtttgcactagttactggcaccaatcttgctgaagctatgaaagtt
ttccagtttccacaagttacaggttctgatgttgctgatcagcttggctcattatcatta
tcgctggatgactga
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