Magnolia sinica: 131223524
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Entry
131223524 CDS
T09699
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
msin
Magnolia sinica
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msin03016
]
131223524
Enzymes [BR:
msin01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
131223524
Transfer RNA biogenesis [BR:
msin03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
131223524
Prokaryotic type
131223524
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF1922
Motif
Other DBs
NCBI-GeneID:
131223524
NCBI-ProteinID:
XP_058074946
LinkDB
All DBs
Position
13:33678382..33740936
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AA seq
504 aa
AA seq
DB search
MAAVAFLRLPLSPLLANPTSLFSFSNPNSLRVFCCCCSPSPSLSSDLLPSSDIDTNADKW
ESFRKKKVVMRVGYVGSDYRGLQMQRDVSTLSTIEAELETAIFKAGGIRDSNYGNLHKVG
WARSSRTDKGVHSLATMISLKMEIPENAWKEDPSGISLANYVNANLPSNVKVFSILPSQR
SFDARRECTVRNYSYLLPAEIIGIKSDSSSTEVDLHISEFTDILRSFEGEHPFHNYTIRA
KYRKQPAVKGHMLRRTRSPKEVPAVEPREDNILETYADDEATQDLSKEDSDTSDYDENLG
NNRGKHADGPKDLDPLLVVRARWLNEPDEMDRIGASHFRKIFRCSCGKLQWSLEIPYIEL
SICGESFMLHQIRKMVGTAVAVKRKLLPHDIVEMSLSKFSRIVLPLAPSEVLILRGNQFS
VRNRPGNIIRPEVRSLVESEDILRVVNEFYSSVLLPQVSKFLDPSKSPWKEWVDNLDANT
SIPDAELEDVRKAWKQWKAKNIVV
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagtcgcatttttgcgacttcccttatctccattactagcgaatcctacctcc
ctcttctccttctcaaatcctaattcccttagggttttctgctgctgctgctccccttcc
ccttccctctcttccgaccttctcccatcttctgacatcgacaccaacgccgataaatgg
gagtctttccgcaagaagaaagtcgtaatgcgagtaggttacgtcggttctgattacaga
ggtctgcaaatgcagcgagatgtgagcactttatcgaccattgaagcagaattggaaact
gctatctttaaggcaggtggaatccgtgatagtaattatggcaatctgcacaaagttggt
tgggccagaagtagccgaactgataaaggagttcattcattggcgaccatgatatcctta
aagatggagatccctgaaaatgcatggaaagaggatcctagtggcatttctcttgcaaat
tatgtcaatgccaatcttcctagcaatgtaaaagtattcagcattttaccttcccaaagg
agctttgatgcaagaagggaatgtacagtccgaaactatagttaccttcttccagccgaa
ataatagggattaaaagtgactctagttctacggaagtagatcttcatatatcagagttc
accgacatattgcgaagttttgagggagagcatcctttccataattacactatacgggcc
aagtatcggaaacaacctgctgtgaaaggccacatgctcagaaggacaagatcacctaag
gaagtacctgcagtggagcccagggaagacaatatactagaaacgtatgcggatgatgag
gctacacaagatctcagcaaagaagattcggataccagtgattatgatgagaaccttggt
aacaatcgaggaaagcatgcggatgggccaaaagatttggatccccttttagttgtccgt
gcaagatggctaaatgaacctgacgaaatggacagaattggtgcatctcacttcaggaag
atattccgctgttcttgtgggaaactacagtggtcactggaaataccttacattgaactc
tccatctgtggggagtctttcatgttgcatcagatccgcaaaatggtgggaactgcagtg
gcggtgaagcggaagctgctaccccatgacattgtagaaatgtccttgtccaagttctca
cggatagttctacctcttgccccttctgaagtcctcatcttgaggggcaaccagttctcg
gtgaggaaccgcccaggcaatataatccggcctgaagtgcggagtctggtcgaatccgaa
gacattctcagggtagtcaatgagttctattcttctgtgctgttgccgcaagtctcaaag
tttttggacccatcaaaatctccatggaaggaatgggttgataatttggatgctaacaca
agcattccagatgcagagttggaggatgttcggaaggcatggaaacaatggaaggcaaaa
aatattgtggtatga
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