Magnolia sinica: 131223532
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Entry
131223532 CDS
T09699
Name
(RefSeq) polyadenylate-binding protein 7
KO
K13126
polyadenylate-binding protein
Organism
msin
Magnolia sinica
Pathway
msin03015
mRNA surveillance pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131223532
09123 Folding, sorting and degradation
03018 RNA degradation
131223532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131223532
03041 Spliceosome [BR:
msin03041
]
131223532
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131223532
mRNA cycle factors
Stress granule specific factors
131223532
Spliceosome [BR:
msin03041
]
Complex C
Other components
Complex C specific factors
131223532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_3
RRM_5
RRM_RdRP1_2
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
131223532
NCBI-ProteinID:
XP_058074960
LinkDB
All DBs
Position
13:34201354..34212120
Genome browser
AA seq
640 aa
AA seq
DB search
MAVPPPPPPPTVPAHASLYVGDLHPDVTEGNLVDAFSGTGNLASVRVCRDSITGRSLGYG
YVNYITPEDATRAMEKLNHTPLNGQLIRIMWSHRDPDARKSGIGNLFVKNLNESINNVKL
HDMFSKFGKILSCKVVMTQDGKSRGYGFVQFESDESANAAIENVNGSMVEGKQIYVGHFV
KKSERMLPSPDAKYTNLYMKNLDLDITEELLREKFSEFGKITNLVIAKDNSGNSRGFGFV
NFDGPDDAKRAMETMNGVQLGTKTIYVARAQKKAEREQILRRQFEEKRNEQMLKYKGSNV
YVKNIDDDVDDDELREHFSQCGTITSAKLMRNDKGISKGFGFVCFSTPEEAGKAVNTFHG
YMFHGKPLYVAIAQRKEDRRAQLQLQYVQRMAALAGPSAAVIPAGYPPLYYTPPPGVVPQ
IPPRQGIMYQHLGLRPEWRASGFSPSTRPPFQPMPLPAIPNTPRQHRQNRGRMNGHMLPQ
AGQSIQFIPQTTQSMNILKDAGNQQRAGQTKYVPSGRQREMNNGTAVPSPASNSVGAGAS
QGTEMLSSMLAAAPPHHQKQILGERLFPLVKKHKFELAAKITGMLLEMDNSELLLLLESP
ESLAAKVEEAVQVLKLSKAKVNGGQDTLHPNYLSAEVAVN
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcccaccaccaccaccaccaccgacggtccccgcccacgcttcgctctacgtg
ggagacctccacccggacgtgacggagggtaatctggtggacgccttctccgggaccggg
aatcttgcatcagtccgcgtttgccgcgactccatcaccggacgttcgcttggctatggc
tacgtcaactacattacacctgaggacgcaacccgtgctatggaaaagttgaatcacact
ccattgaatgggcaactgataagaatcatgtggtctcatcgagatccggatgcaagaaag
agtgggatcgggaatctgtttgtgaagaatttgaatgaatcaataaataacgtaaagctt
cacgatatgttttccaagtttggaaaaattttgtcttgcaaagtcgttatgactcaggat
gggaagagtagagggtatggatttgtccagtttgaatctgacgaatccgcaaatgccgcc
attgagaatgttaatggctccatggttgaaggcaagcaaatttatgtaggtcactttgtc
aaaaagagtgaacgcatgttacccagccctgatgctaaatataccaatttgtatatgaag
aatcttgatctagatattacagaagaacttctccgagagaagttctccgaatttgggaaa
attactaatcttgttatagcaaaggacaatagtggaaactcaaggggatttggatttgta
aattttgatggccctgatgatgccaaacgggcaatggagacgatgaatggagtgcagctt
ggtactaagactatatatgtagcaagggcccaaaaaaaagcagagcgggagcaaattctc
cgtcgtcaatttgaggaaaagcgcaatgagcagatgctcaaatataagggctcaaatgtc
tatgtaaagaacatagatgatgacgttgatgatgatgaactgcgagaacatttcagtcag
tgtggcacaatcacttccgccaaactaatgcgcaatgataagggaataagtaaggggttt
ggatttgtgtgcttttctactcctgaagaagctggcaaagctgtgaacacttttcatgga
tacatgttccatggaaaacctttatatgtggcaatcgcccaacggaaagaggataggcgt
gctcagttgcagctgcagtatgtgcagcgtatggcagcattagcaggaccctcagctgct
gtcatccctgccgggtatcctcctctttactatactccacctcctggtgttgttccgcaa
attccaccaaggcaggggattatgtatcaacacttgggtctgagacctgaatggagggcc
agtggattttcaccatcaacaagaccgcctttccaacccatgccacttcctgcgattcca
aacactccaagacagcatagacaaaataggggccggatgaatggacatatgcttccccag
gctggtcaatctatacaatttattccacaaacaactcagtcaatgaatattttgaaagat
gcaggcaatcagcagcgggctggacaaactaaatacgtgcccagtgggaggcagcgagag
atgaacaacggaactgcagttccatctccagcttctaactctgtcggagcaggagcctcc
caggggacagagatgttgagtagcatgcttgcggctgcacctcctcaccaccaaaagcag
atacttggagagcgtctcttcccccttgtcaagaaacacaagtttgagcttgctgcaaag
attactggaatgctcttggagatggacaattctgaactgctgctgctattggagtcgcca
gagtcgttggctgccaaagttgaagaagctgtacaggtactcaaactctcgaaggccaaa
gttaatggtggtcaagacactcttcatcccaattacttatcagctgaggttgccgtcaac
taa
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