Magnolia sinica: 131223864
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Entry
131223864 CDS
T09699
Name
(RefSeq) ATP-dependent RNA helicase DBP2-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
msin
Magnolia sinica
Pathway
msin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131223864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msin03041
]
131223864
03009 Ribosome biogenesis [BR:
msin03009
]
131223864
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131223864
Spliceosome [BR:
msin03041
]
Complex A
U1 snRNP components
U1 related factors
131223864
Complex B
131223864
Ribosome biogenesis [BR:
msin03009
]
Eukaryotic type
Pre-60S particles
Helicases
131223864
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
131223864
NCBI-ProteinID:
XP_058075374
LinkDB
All DBs
Position
13:complement(75220809..75302510)
Genome browser
AA seq
563 aa
AA seq
DB search
MSYVPPHLRTSVAPPHTLSSHLQNPTSQTLEFNPSKLSPQNSLPPTLSKSSTFSNAPRRT
TSVPNSRALPVPEPVFEQWKPSDRVFRLKPEQIEEVRLRLNVDVTAAPDSPPAPPPIESF
TDMCLHPSIMKDIAFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFSIPMIQHC
LAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESFRTAIVVGGTNMSEQRSELR
AGVHIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPKKHQT
LLFSATMPVEIEALAQEYLSNPVQVKVGKVSSPTANVSQILEKVTESEKIDRLLALLVEE
SCQSERSGHPLPLTIVFVERKTRCDEVAEALVAQGLHAVALHGGRSQSEREAALRDFRNG
STNILVATDVASRGLDVTGVAHVVNLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDM
FLVAHIRKAIADAESGNSVSYATGKVARRKEREAAAAQREARVSLSKLSVNGPTSINIED
KYKYMLTPTSVKREGAADDAWDD
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtacccccgcacctccgaacttccgttgctcctcctcacactctctcctct
catctccaaaaccctacctcccaaaccctagaattcaatcccagcaagctctccccccag
aactctctccctccaactctctccaagagctccaccttctcaaatgccccccgccggacc
actagtgttcccaattcccgagctctaccagtcccagagcccgtcttcgagcaatggaag
ccctccgaccgcgtgtttcgactcaagcccgaacagattgaagaggttcgcttgcggtta
aatgttgatgttacagctgctccagattcccctcctgcacctccacctattgaatcattt
acagatatgtgtttgcacccaagcatcatgaaggatattgcttttcatgaatacaccaga
ccgacttctattcaggcgcaagccatgccagttgctcttagtgggagggatcttttgggt
tgcgcggagactgggagtgggaaaactgctgctttttccatccccatgattcagcattgc
ttggctcaaccacctattcggcgtggtgatggacctttagcattggtcttggctcctaca
agagaacttgcccagcaaatagagaaagaggttaaggcgtttagtcggtcactggaatcg
ttcagaactgctattgttgtgggaggaacgaacatgtcagaacagagatccgaactacga
gcaggagtacatattgtggttgctacacctggaagatttatcgatcatctacaacaagga
aatacatctctctcaaggatctcatttgttgttctagacgaggcggacagaatgctagat
atgggttttgaaccacaaataagagaggtgatgcgaaatctccctaaaaagcaccaaaca
ttgttgtttagtgcaaccatgccagtggagattgaagcgcttgcacaggagtatctaagc
aatcctgtgcaagtaaaggtgggaaaagtaagtagcccgacagcaaacgtatctcagatt
ttggagaaggttactgaaagcgagaagattgatcggcttctggctttgcttgtggaggag
tcatgtcaatctgaaagatccggccatccccttcccctaactattgtttttgttgaaagg
aagactaggtgtgatgaagtggctgaagctttagtggcacaaggtctacatgcagttgct
cttcatggaggtcgtagtcaaagtgaaagagaagctgctcttcgtgattttaggaatggt
tctaccaacatcttggtcgcgacggatgttgcctctcgtggtctggatgttacaggagtt
gctcatgttgttaacctggatcttccaaagacaatggaggattatgtgcatcggattgga
aggactgggcgtgcaggatcaacaggccaagctacttcattttataccgatcgggacatg
ttccttgtggcacatataaggaaggcaattgcagatgcagagtctggaaattctgtgtcg
tatgcaactggaaaagtcgcccggaggaaggaaagagaagcagctgctgcccagagagaa
gcaagggtttcgctttctaagctctcggtgaacggtcccacgtcgataaacattgaggac
aagtacaagtacatgctcacacccacaagtgtcaagagagagggtgctgctgatgatgct
tgggatgactga
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