Magnolia sinica: 131223922
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Entry
131223922 CDS
T09699
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
msin
Magnolia sinica
Pathway
msin03440
Homologous recombination
msin03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
131223922
03460 Fanconi anemia pathway
131223922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msin04121
]
131223922
03036 Chromosome and associated proteins [BR:
msin03036
]
131223922
03400 DNA repair and recombination proteins [BR:
msin03400
]
131223922
Ubiquitin system [BR:
msin04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
131223922
Chromosome and associated proteins [BR:
msin03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
131223922
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
131223922
FA (Fanconi anemia) pathway
Downstream FA components
131223922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
DUF3806
Motif
Other DBs
NCBI-GeneID:
131223922
NCBI-ProteinID:
XP_058075485
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All DBs
Position
13:complement(82357814..82475302)
Genome browser
AA seq
1219 aa
AA seq
DB search
METTTTPELPTWTIVSDGGKHLEWSFSGRVPYGTSAQTPPQNLINSLPSMSNFVLQESSK
IIGDVGSDERDVPMFRTGWGKSVTVKQSSIRKALSVLGEGEILERGSSKIIGESIVDDIP
IFRTGSGKSVAVKQSSIRMALSVLGGGKILQGDQVHNAADHQCHSSNSLFQTSSGKMVNI
SSAGLIRAKTLLGLEENYNPLTSQGPRDTKKQSGTNGLSGWGKSQCVEKNASAILGTANI
HSSGTLDASSFPKCPISCPRDKYSSGIGNQSKKDVLANLLNSDTCRSSSEQPPVKFQTAG
GRSISVSSDALQRARNLLGESDSGISPNEDDTYDPLFLLPREEKTSNDNSLNKEDVSHAS
FLYQNATMNQYWGNRFPSHKGSMFNQKQSSYLLEATDSRDGILKHVDANGLASEGISRSN
SNRGYMKRPPSDDLYATQMLVGNSSAKDLASQTIPATVPSGKPLVEISNSKETTCANQKR
ITSEKRRLVKKSFTSPFKRPRSSIFSTPLKSSMSFPCTGSSALPTLEGSRCKRRVSTRYP
FQVKRHTVKEFFGGPPCKTDSLTHLSNEIKYMNADSAEKYIFHAASGLDGIGAEALRNML
AQCGASLLHATKEWVANHYKWIVWKLACLERGYPAHASGKFLTVPNVLEELKCRYEREVN
HGHRSAVKRILEGDASPASMVVLCISAICSYPDSDPEIAECPLAPYEYPKKITGWSGGGA
ENNHVAKIELTDGWYSFDALLDAPLTKQLVAGKLFVGQKLRIWGAGLCGWVAPVSPLESS
KTISLVMHINGTYRAHWADRLGFCKSIGAPLAFRCIKCAGGPVPRTLVGVTRIYPILYKE
RLANGGFVVRSERMEARMMQLYNQRCSTIAEGIMSQTQDIFGSHSNDDSDSEGAKIFKLL
ETAAEPEVLMADMSLEQLTSFATYQAKREAIRQSDMQKNVEKALNDAGLGGRQVTPLMRV
RVVGLTAKCSQIKGCPREGLITIWNPTEKQQVSLVEGQIYCTGGLVPLYSHSNIIHFQAR
GSTTTWQHLPSSAVECFKPFFNPRKPILLSNLCEVPLASEFDTAAVIVYVGDVYLSGNQK
KQWVFVTDGSESGSELQSEGHSICLLAICFCSSITENDAFTPVDHSILGSTVTEEATCST
GIYRTWATHRLGTTILHVLAQKSRFTNQCQSLSQQTRACQTSRPHSCWEWRCLYTPKLCN
AQPGFVLLRVTACEEDVNC
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgacgacaacgccagagctcccgacgtggacgatagtttcggatggcggaaaa
cacttagagtggagcttttccggcagagttccctatggcacctcagcccaaaccccccct
caaaatctcatcaattccctcccttccatgtctaattttgtgctccaagaatcttcaaag
attattggagatgttgggagtgatgaaagggacgttccgatgttccgcactggatgggga
aagtccgtcacggtgaaacagtcttctattagaaaagcattgtcggttcttggagaagga
gagatcttggagagaggatcttctaagattattggagaaagcattgttgatgacattcca
atcttcagaactggatcaggaaaatctgttgcggtgaaacagtcttctattagaatggca
ttgtctgttctcggaggtggaaagattttgcagggtgaccaagtgcataatgctgcagac
catcaatgccactcctcaaattcacttttccagacaagctctgggaaaatggtaaacata
tcgtctgctggtctcatcagagctaagacattgttggggttggaggagaactacaaccct
cttacttctcaaggtcccagagacacaaagaaacaatcaggtactaatggattgagtgga
tggggaaagtcgcagtgtgtggagaagaatgcgagtgcaattcttggaactgccaacatt
catagtagtgggaccttagatgctagttcatttccaaaatgtccgattagctgtccaagg
gataaatattcatctggaattggaaaccaatcaaagaaggatgtacttgcgaatcttctc
aattctgacacgtgcagatcttcttcagaacagcctccagttaagttccaaacggcaggt
ggaagatctatatcagtttctagtgatgcattgcagcgtgcaaggaaccttcttggtgaa
tcagactcggggatatcaccaaatgaagatgatacttatgatccactgtttttgttgcct
agagaagagaaaactagcaatgacaattcactgaacaaagaggatgtttctcatgcttcc
tttttgtaccaaaatgctacgatgaaccaatattgggggaacagattcccatcccataaa
gggtcaatgttcaaccagaagcagtcatcctatcttctggaggctactgattctagggat
ggcatcctgaaacatgttgatgcaaatggcttggcatctgagggcatctccaggtcaaac
agcaatagaggttatatgaaaaggcctcctagtgatgacctctatgcaactcaaatgtta
gttggaaattcttcagcaaaagatcttgcttcacaaacaattccggctacagtgccatca
ggtaagccactggttgaaatttcaaacagcaaggagacaacttgtgcaaatcagaagaga
attactagtgaaaaaaggagacttgtgaagaaaagctttacttctccattcaaaaggccc
cgtagttctatattctccacccctttgaaaagtagcatgtcattcccttgcactggttca
tccgcattaccgacactcgaaggttcccgttgcaaaagaagggtttccactcgatatccg
tttcaggttaagaggcatactgtgaaggaattttttggagggccaccatgtaaaactgac
tctctgacccatttatcgaatgagataaagtacatgaatgcggatagtgcagaaaagtac
atattccatgctgcatctggcttggatgggattggagcagaagcccttcggaacatgttg
gcccagtgtggagcttccttgctacatgccactaaagagtgggttgcaaaccattacaaa
tggattgtatggaaacttgcatgccttgagagaggctatccagctcatgctagtggcaaa
ttcttgacagtgcccaatgtgcttgaggaattaaaatgcaggtacgagagagaagtaaat
catggtcataggtctgcagttaagagaattttggaaggcgatgcatcacctgcttcaatg
gtagttctatgcatttcagctatttgctcctaccctgattcagaccctgagatagcggaa
tgccctttggcaccatatgaatatcctaagaagataactggctggagtggaggtggagct
gaaaataatcatgttgcaaaaatagaactaactgatggttggtattcatttgatgccctt
ttggatgcaccacttactaagcaacttgttgctggaaaattgtttgtgggccagaaactt
cggatttggggagcaggcttatgtggctgggttgcaccggtttcacccctagagtcatcc
aagacaatcagtttggttatgcacataaatgggacatatcgagcacattgggctgaccgg
ttgggattctgtaagagcattggtgcgccattggcttttaggtgcatcaagtgtgcaggg
ggtccagttcccaggacattggttggggtgacacgaatttatcctattctatacaaggag
aggttagctaatggaggttttgtggtaagatcagaaagaatggaagctagaatgatgcaa
ctatacaaccagaggtgctctactattgcagagggcattatgtctcaaactcaggacata
tttggttcccatagtaacgacgatagtgatagtgaaggggcaaaaatctttaagctcctt
gagacagctgctgagcctgaagtcctaatggcagatatgagtttggagcaactgacttca
tttgcaacttatcaggcaaagcgggaggcaatcaggcagtcagatatgcagaagaatgta
gagaaagccctgaatgatgcaggccttggtgggagacaggtcacccccttaatgagagta
agggtggtgggcctaactgctaaatgttcccaaataaaaggttgtcctagagaaggcttg
ataacaatatggaacccaactgaaaagcagcaggtcagtctggtggaggggcagatatac
tgcactggaggactagtgccactgtactctcattctaatatcatccacttccaagcaaga
gggtctactacaacttggcaacacttaccatcatcagcagttgaatgtttcaaaccattt
tttaatcctcgcaaaccaatattattgtcaaatttgtgtgaagttcctctagccagtgaa
tttgatacagcagctgtaattgtgtatgtgggggatgtttatttatccggaaaccaaaag
aagcagtgggtgtttgtgacagacgggtctgaatcagggtctgagttacagtcagaggga
cattccatctgtttactcgctatctgcttctgctcatccatcaccgaaaatgatgcattc
acaccggttgaccactctatattaggatccactgttactgaagaggcgacttgcagcaca
ggcatatacaggacctgggctactcatcgtctgggtaccaccatattgcatgtcctggcc
caaaaatcaaggttcactaatcagtgccaaagcctgtctcagcaaacaagagcctgccaa
acctctcgccctcattcatgctgggaatggagatgtttatatacaccaaaactgtgtaat
gctcaacccgggttcgttttgttgcgtgtaactgcatgtgaagaggatgtcaactgttaa
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