Magnolia sinica: 131223924
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Entry
131223924 CDS
T09699
Name
(RefSeq) E3 ubiquitin-protein ligase listerin isoform X1
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
msin
Magnolia sinica
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msin03009
]
131223924
04121 Ubiquitin system [BR:
msin04121
]
131223924
Enzymes [BR:
msin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
131223924
Ribosome biogenesis [BR:
msin03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
131223924
Ubiquitin system [BR:
msin04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
131223924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
zf-RING_2
HEAT_GCN1
zf-rbx1
FANCL_C
zf-C3HC4
zf-RING_16
zf-ANAPC11
zf-C3HC4_2
ParcG
MMS19_N
RINGv
IBR_1
zf_RING_Vps8_fungal
zf-RING-like
C1_1
Motif
Other DBs
NCBI-GeneID:
131223924
NCBI-ProteinID:
XP_058075496
LinkDB
All DBs
Position
13:82557377..82730217
Genome browser
AA seq
1940 aa
AA seq
DB search
MGRQKGEGGRSKSRPSSSSHAASLLPSGTAPVGFGGYIGSSRLDPSISNDESVPFLDVDG
EVAQHLKRLGRKDPTTKLKALTSLCTLFKQRSGEEVVQIVPQWAFEYKRLLLDYNREVRR
ATHDTMTNLVSIVGRGLAPHLKSLMGPWWFSQFDPISEASQAARRSLQAAFPAQEKRLDA
LILCASEIFLYLDENLKLTPQAMLDKATPMDELEDMHQRVISSSLLALSTLVDILLEMQV
RRPDLENVTTESKHAFRAREVAISYAEKMFSSYKYFLEFLKSQSPGVRSAVFSVLGCFIK
HIPHAFSEGNMKTLSVAILGAFQENDPSCHSSMWDAILLFSKKFPDSWSLGNIQKIVLSR
FWHFLRNGCYGSQQVSYPALILFLDSIPPKAIAGEEFFLNFFHNLWEGRNSFHSSADRLA
FFKAFKECFLWGICNASRYSEGRDAIREFQVNLVDHILVMLLWHDYLLLVSPKIQGDNFS
GKSGASSDERPTETLCTRYVESYMQDLGKCIIEILSAISMKECNLLSAFCASFQKDCLEI
FQQAESPQKSSEHVEQIVNFLSLLEKHAVQKGETWPLIYLVGPMVVNSFPLIKSLDSTDG
VRVLSVVVTIFGPRAIVPQFFSSNTDHSSDFGDEGNDESKLKHFLEVFKDDFVSWCLHQN
SSSSSSRLDLLLALLDEQLFSEQWCIIITRATNPEECPETGVGYSSIDRISLLAMLMEKV
RGRISSKNYKEGCRPEHWHHELLNSAAVSVACCPPPFHTSYSQFLRVVLSASAEDEQTCF
LSKETMIHIFKEVLRKLLPVLIHSSFTWAKHASSLIRCTGAEDLMQTCDSSLSNIVEIAQ
FAIEVLEGCYSSLKQLDGHCNLVPCILAAVFIIDWECRMASQVEGSPKCIGYKTYIGSSV
STSDGDDDPQAEVDAKLTLTKSIHAIRCKITTYFRKSLSLYSRQKLGDILIQAIRSAVFG
ADPGCADKAPVSCCEWVQDVLELICQDHHEEQSVLDQLLSEDESWPLWVAPFVSDGRRSA
TLKEKNAFAAVHTARHHYFIAFVDKLISSLGARRVIVGTVVSYSLAEAPGELVPMLTSYS
RVWLAAEILCMWKWEGGSALCTFLPFLREYAKTGKSSPDENLIYSLINILLDGALVHGAS
GQTFFFDAWVATDDEIENIQDPFLRALISLLSTLMIKDNIWGKDEAVSLFERVLNNLFIG
TTVNRNCLRILPFILKVLIQPLRSKSTRADEGGNDVPHDSLQEVQIIDTILGWLQMALSS
PPLVTWQTGKHVFEEWVQVVISCYPLSTTGLATLKMALSRNISQSEKTLLMDLFRKQRSD
VNVSTLAKKIPLAAPSSIDIPLSVSVQMMLSQLIAVSVGYCWQEFGEDDWDFVLSLSRRW
MESAVVVMEEIAENVDVIVSTSSSDNLEVVVDKLEKAVQVPEPSLMNISRIAVFIFSIFC
GLPELQLAEDSMISHSLKMEKWDHTKDQILEGILRLFFATGITEAIASSYHEEVSSIVAS
TRLAHSHFWELVAFSVINSPEYVRNTAVRSVELWELSRGPISSLYAILYSSKPIPSLQVA
AYTVLSTEPVCHMAVTKDDTAHCSDQNVVSFQEPGTSHQSESSSEEPVHLRDELSCMVEK
PQSDLFQMDLLAQHRVNVFISWALLLTHLQSLPSSSPAREKLIQCIQDNASSTILDCVFQ
HIPLKLGLGHNLKKKEADLPAEVSKAATSAKRAITTGSLLFAVESLWPVGTEQMASLAGS
IYGLMLSLLPAYVRNWFTGSRDHSMSSAIESFTKTWCSPPLLADEFSQIKEAVVADENFS
IIMNKSAYEVIATYKKEETGMDLVIRLPSCYPLRPVDVDCTRSLGISEVKQRKWLLSMTA
FVRNQNGAIAEAIRIWKSNFDKEFQGIEECPICYSIIHTTNGSLPRLACKTCKHKFHSAC
LYKWFSTSHKSTCPLCQTPF
NT seq
5823 nt
NT seq
+upstream
nt +downstream
nt
atggggagacagaaaggagagggagggaggagcaagagtcgcccttccagcagcagccac
gctgcgtccctcttaccctctggaacggcacctgttggattcggaggctatattggaagc
tctcgcctcgatccgtccatctcaaacgatgaatctgtcccgttcctggatgtggatggt
gaagtggcacaacacttgaagaggcttggtaggaaggatcctacaacaaagcttaaagct
ttgacatctctatgtacactcttcaagcaaagatctggcgaagaagttgtgcagattgtt
ccacaatgggcatttgagtacaagaggctcttactcgactacaatagagaagttcggcga
gcaactcatgacaccatgactaatcttgtcagcatcgtcgggagaggcttggccccacat
ctgaagtccttgatggggccttggtggttttctcagtttgatccaatatctgaagcttct
caagctgctaggcgatccttacaggctgcatttccagcacaggagaagagactggatgcc
ttgattttatgtgcaagtgagatctttctgtatttagatgaaaacctaaagctcacacca
caggctatgcttgataaagcaactccaatggatgaattggaagatatgcaccagcgtgtg
atttcctcatcattgctagcattatctacacttgtcgatattttgttggagatgcaagta
cgaagacctgatcttgaaaacgtaaccaccgaatcaaaacatgcttttagggctagggaa
gtggccatttcttatgctgagaagatgttttctagttataaatattttctggaatttctt
aagtctcaaagccctggagtccgctctgctgtcttttcagtgctagggtgtttcattaaa
cacatccctcatgcttttagtgaaggaaatatgaagacactatctgttgcaatactaggt
gccttccaggaaaatgatccgtcttgtcattcttcaatgtgggatgcgatattgctattt
tctaaaaaatttcctgacagttggtccctgggtaacattcagaagattgtactatctcga
ttctggcattttctacgtaatgggtgctatggatcacaacaagtatcttaccctgctcta
attctgttcttagattccatccctccaaaagcaatagctggggaggaattttttctgaac
ttcttccataacctttgggagggaaggaattctttccactcatctgcagatcgcttggca
ttcttcaaggcatttaaagaatgttttctttggggaatatgtaatgcatcaagatattct
gagggaagagatgctattcgtgagtttcaagtcaatcttgttgaccatatcctggtaatg
cttctttggcatgactaccttttgctagtaagcccaaaaattcagggtgacaatttttct
gggaaatctggtgcatcatctgatgaaaggccaactgaaactctgtgtacaaggtatgta
gaaagctacatgcaagacttggggaagtgcattattgaaattctatctgccatttctatg
aaagaatgcaatttgctcagtgcattttgtgcatcatttcaaaaggactgtctggagata
ttccagcaagcagagagtccacaaaaatcttctgagcatgtagagcagatagtgaatttt
ttgtcattactggagaagcatgcagtgcaaaaaggcgaaacttggcctctgatttattta
gtaggacctatggtggtgaactcgtttccgttgatcaagtcactggactccacagatggt
gtgagagttttatctgtggtggttacaatatttggaccacgcgcaatagtgccacaattc
tttagtagcaatacagatcattcgagtgattttggagatgaaggcaacgatgaatcaaaa
ttgaagcattttttggaagttttcaaggatgattttgtttcctggtgtctgcatcaaaat
agcagctccagtagctcacggctagaccttttacttgctttacttgatgaacaacttttc
tccgaacaatggtgtatcatcatcacgcgagcaaccaatccagaagaatgccctgaaact
ggggttgggtattctagtattgatcgcattagtctgctggcaatgctcatggagaaagta
aggggaagaatcagtagcaagaattataaagaaggatgtcgcccggaacactggcatcat
gaattgttaaattcagctgctgtttctgttgcctgctgccctcctcccttccatacatca
tattctcagtttctgcgggtagttctctctgcctcagcagaagacgagcaaacttgcttt
ctttctaaagaaactatgatccatatatttaaggaagtcttgagaaaattacttccagtt
ctcattcattcatctttcacttgggcaaagcatgctagttctttgatacgctgcactgga
gctgaagatttaatgcagacatgtgattcatccttaagcaacattgttgaaatagctcaa
tttgctattgaagttctcgagggctgttactctagcctaaagcaattggatgggcactgt
aatctggttccatgtattttagctgctgtatttattattgattgggagtgtaggatggca
tcacaggtagaagggagtccaaagtgtattgggtataaaacttacatcggaagttctgta
tctacatctgatggcgatgatgatccacaagcagaggttgatgccaagttgactcttacc
aaatccattcacgctatccgttgtaagataactacctatttccggaaaagccttagtctt
tatagtcggcagaagttgggagatattttaattcaggcaatcaggtctgctgtctttggg
gccgatcctggttgtgcagacaaagcccctgtttcatgctgcgagtgggtgcaagatgtg
cttgaactcatttgtcaggatcatcatgaggagcaaagtgttttggaccagctgttgtct
gaggatgaatcttggcctttgtgggtagctccatttgtcagtgatggaagaagatcagca
accctgaaagagaaaaatgcgttcgcagctgttcatacagccaggcatcactacttcatt
gcttttgttgacaagcttatttcaagtcttggagcccgtagagttattgtgggtactgta
gtttcttattcattagcagaggcaccaggagagctggttccaatgctcacctcttattct
cgagtgtggcttgctgctgaaatattgtgcatgtggaagtgggaaggaggcagtgcttta
tgcactttcttaccttttctaagggaatatgcaaaaactggaaagtcttctcctgatgaa
aacctcatatattccctaatcaacattttacttgacggtgcccttgtccatggagcaagc
ggccagacatttttctttgatgcatgggttgctacagatgatgagattgagaatattcaa
gacccattcttgcgagctcttatatccttgctttcaactctaatgatcaaggataatata
tggggaaaggacgaggctgtttcactttttgaacgtgttctgaataaccttttcattggt
acgacggtgaacaggaactgtttgaggattcttcctttcattctgaaagttcttattcaa
ccactacgaagtaaaagcaccagagcagatgaaggtggcaacgatgttccacatgattcc
ctccaggaagttcagattattgatactatcttgggttggcttcaaatggctctttcttct
ccgcctctagtcacttggcaaacaggaaaacacgtttttgaggaatgggttcaagtggtc
atatcttgttaccctttaagcacaacaggactagcaacattaaagatggcattgtcgagg
aacatcagtcagtcagagaaaacattactaatggatctattcagaaagcagagaagtgat
gttaatgtctcaaccttggcaaagaagatacctttagctgcaccatccagcatcgacata
cctttgtcggtatcagtacagatgatgttatcacagctaatagcagtttctgttgggtat
tgttggcaggagtttggtgaagatgattgggactttgtattgtctctgtcacgtaggtgg
atggaatctgcagtagtggtgatggaggaaatagcagagaatgtagatgttattgtgagc
acttcctcttctgataatctggaagtcgttgtagataagctcgaaaaggcagttcaggtg
ccagagccttctcttatgaatattagtagaattgccgtctttatattttctatattctgt
gggcttcctgaattacagctggcagaagattccatgatatctcactccttgaaaatggaa
aaatgggatcatactaaagaccagatacttgaaggtattctccgcttgttctttgcaaca
ggcattactgaggccattgcaagttcctatcatgaagaggtgtcatctattgtagcgtcg
actcggcttgcacattcacatttttgggagttggttgcttttagtgttattaattcgcct
gaatatgtcagaaatactgcagtacggtccgtagaactctgggagcttagcagagggcct
attagttctttgtatgcgatcctttattcctccaaacccattccttccttacaggttgct
gcttatactgtcctctcaactgagcccgtttgtcatatggctgtcaccaaagatgataca
gctcattgctcggatcaaaatgttgttagcttccaggaaccaggcacatctcatcagagt
gaatcatcttcagaagagcctgtccatttgagagatgagctttcttgcatggttgaaaaa
ccgcaatctgatctatttcagatggatttattggcgcaacatcgggtgaatgtgtttatt
tcgtgggcgttattgctgactcatctacagtccctaccatcatcatcgccagcaagagag
aaactaattcagtgtatacaggataatgctagttcaacaatactagattgtgttttccag
catattccattgaagctgggtttagggcataacttgaagaagaaagaagctgatcttcca
gcagaggtatctaaggccgctacttctgccaaacgtgccatcaccacaggctctttactg
tttgccgtggagtcactttggcctgtcgggacggagcaaatggcttcacttgctggttca
atatatgggctgatgctttccctactacctgcttatgtgcgaaattggtttactggttca
cgtgaccattctatgtcatccgcaattgagtccttcacaaaaacatggtgcagtcctcca
ctccttgctgacgaattttcacagatcaaagaagcggttgttgctgatgagaacttctca
attatcatgaacaaatcagcatatgaggtgattgctacctataaaaaagaggagacggga
atggatttggttattcggcttccctcttgctaccctctgcgccctgtggatgttgattgc
actaggagtcttgggattagtgaagtgaagcaaaggaaatggctgctgtcaatgactgca
tttgttcgaaatcagaatggggctattgctgaagcaatccggatctggaaaagcaacttt
gacaaggagttccaaggcatcgaggaatgccccatctgctacagcatcatccacacgact
aatggcagccttccccgtcttgcatgcaagacctgcaagcacaaattccactcagcctgc
ctctacaagtggttctcaacatcccacaaatcaacatgccctttgtgccagactccattc
tga
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