Magnolia sinica: 131224827
Help
Entry
131224827 CDS
T09699
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
msin
Magnolia sinica
Pathway
msin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131224827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msin03041
]
131224827
03009 Ribosome biogenesis [BR:
msin03009
]
131224827
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131224827
Spliceosome [BR:
msin03041
]
Complex A
U2 snRNP components
U2 related factors
131224827
Complex B
131224827
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
131224827
Ribosome biogenesis [BR:
msin03009
]
Eukaryotic type
90S particles
Helicases
131224827
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
ResIII
AAA_19
nSTAND3
ABC_tran
SRP54
AAA
T2SSE
TsaE
AAA_30
AAA_24
Flavi_DEAD
PhoH
AAA_29
Motif
Other DBs
NCBI-GeneID:
131224827
NCBI-ProteinID:
XP_058076215
LinkDB
All DBs
Position
14:complement(5272714..5282563)
Genome browser
AA seq
720 aa
AA seq
DB search
MSDRREKVSLFDAVDGNSVPAELPEVKGFFSVASANIWTGRPYSQRYFEILEKRKTLPVW
QQKDEFLQALNDNQTLILVGDTGSGKTTQIPQFALEAGYALDKVEGHKMIACTQPRRVAA
TSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPKTVLKYLTDGMLLREAMTDPLLEQYQVII
LDEAHERTLATDVLFGLIKEVLKNRQDLKLVVMSATLEAEKFQVYFNNVPVMKVPGRLHP
VEIFYTQKPEKDYLEAAIRTVVQIHTSEPPGDVLVFLTGEEEIEDACRKIKKEICDLGDH
VGPVKVVPLYSTLPPSMQQRIFEPAPAPLQATGPPGRKIVVSTNIAETSLTIDGIVYVID
PGFAKQKVYNPRVRVESLLVAPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNDLQPQTF
PEVLLSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLG
EIMSEFPLDPQMSKMLVVSPEFNCSNEILTISAMLSVPNCFLRPKEAQRDADEAKRRFSH
IDGDHLSLLHLYHAYKKNNEDPSWCYENFVNQRALKLADNVRQQLLRIMARFNLKLCSTD
FNSRQYYISIRKAMLAGYFMQVAHLECRGDYLTVKDNQEVALHPSNCLDHKPEWVIYNEY
VLTSRHFIRMVTDVRGEWLIEIAPHYYDLTNFPNCEAKGVLERLYKKHAREKRENRNRTK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgtcggataggagggagaaggtgagcttgttcgatgcggtggacgggaattccgtcccc
gccgagctgccagaagttaaaggatttttcagtgtcgcttcggctaatatatggaccggc
cggccttactcccagcggtatttcgagattctggagaagaggaagacacttccagtctgg
cagcagaaagatgagttcttgcaggctctgaatgataatcagacattgatcttggtcggc
gatactggcagcgggaaaacaactcagattcctcagtttgcactggaagctgggtatgct
ctcgataaagttgaggggcataagatgattgcatgcacccagcctcgtagggtggctgca
acatctgtttctcgacgtgtagctgaagagatggatgtaacaataggagaagaagttggt
tacagcatccgttttgaagattgcagcagtccaaaaactgttctgaagtacttaacagat
ggtatgcttctaagagaagctatgacagatccactgttggaacaataccaggtgataatt
cttgatgaagctcatgaacggactttggcaacagacgttctatttgggcttataaaggaa
gtactgaaaaacagacaggatctgaagctggttgtgatgagtgcgacgcttgaggctgaa
aagtttcaagtttatttcaataatgtgccagtcatgaaagttcctggaaggcttcatcca
gttgagattttctacacgcagaaacctgagaaggattaccttgaagcagcaattcggact
gttgtgcagatacacacgagcgaacctcctggcgatgtacttgtattcctcactggagag
gaggagatagaagatgcgtgcaggaaaataaagaaagaaatttgtgatctgggtgaccat
gtgggacctgttaaagtagtgccactatattctacattgcctccgtcaatgcagcagagg
atatttgagcctgctccagctccactgcaagcgactggtcctcctggaaggaagatcgtg
gtgtcgaccaacatcgcagaaacttctcttactattgacggtatagtttatgtgatcgat
cctgggtttgctaaacaaaaagtatacaatccacgggtgcgagtggaatctttgctcgtt
gcaccaatatcaaaggcaagcgcacaccagagatcaggtcgtgctggtagaacgcaacct
gggaaatgctttagactctacactgaaaaaagtttcaatgatcttcagccacagacgttt
cctgaagttctgctgtcaaacctagcaaatactgttctcaccttgaaaaagcttggaatt
gatgatctggtacatttcgattttatggaccctcctgcccctgaaacactgatgcgtgca
ctggaagtcttgaactacttgggtgctctggacgatgatgggaacttgaccaagttgggt
gaaattatgagtgaatttcccttggatcctcagatgtctaagatgcttgttgttagccct
gagttcaattgttctaatgaaatcctcacaatctctgctatgctgtcagtacccaattgc
tttcttcggcctaaagaggctcagagagacgcagacgaagccaaacgccggtttagccac
attgatggggaccacctttcactgctacacttgtatcatgcttacaagaaaaacaatgaa
gatccatcgtggtgttacgagaattttgtcaatcaaagggcattgaagttagccgataat
gtgaggcagcagcttttgcgcatcatggcccggttcaacctcaagctatgcagcacagat
ttcaacagtcgacagtattacatcagcataagaaaggctatgctggcagggtattttatg
caggtggctcaccttgagtgtcgcggggactacttaacggtgaaagataatcaagaggtt
gctttgcatccatccaactgcctggatcacaagccagagtgggtcatctacaatgagtat
gtcttaacaagtaggcatttcatccgtatggttacagatgttcgaggagagtggctgatc
gagatagcaccgcactattatgatctcaccaattttccgaactgcgaagcgaagggtgtt
cttgagaggctgtacaagaaacatgctagagaaaagagggagaataggaacaggaccaaa
tga
DBGET
integrated database retrieval system
