Magnolia sinica: 131225881
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Entry
131225881 CDS
T09699
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
msin
Magnolia sinica
Pathway
msin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131225881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msin03041
]
131225881
03009 Ribosome biogenesis [BR:
msin03009
]
131225881
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131225881
Spliceosome [BR:
msin03041
]
Complex A
U1 snRNP components
U1 related factors
131225881
Complex B
131225881
Ribosome biogenesis [BR:
msin03009
]
Eukaryotic type
Pre-60S particles
Helicases
131225881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Transformer
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
131225881
NCBI-ProteinID:
XP_058077461
LinkDB
All DBs
Position
14:complement(4576630..4595788)
Genome browser
AA seq
1085 aa
AA seq
DB search
MATTESAPTSSGPRYAPEDPSLPKPWKGLIDGSSGNLYYWNPETNVTQYEKPAAMTPPLP
AGPPPTTATPKLAPIPVARTLQPNGMLSHPGQQMLQLPGQQTPQQLGQQTPPLQLGQQMP
QQQGQQMLQQQGQQMPHQQGPQMAQQQGQHFPHQQMHQMPHQQISFAQGQQITQQQMQQT
AHPQGQQFPPQQGQQFGYMQREEIGFQQGKPAGFSLSHSSVHNLPPGSHPVQIPQMGVHS
AHTEQPGSSSSNLQQQGASLVQLQQSGMDSVHRQPMGGPMVPNQTGQVMAHNQQGGGPPM
GFKMGYEEDPRGRSNNEFYFNSGKGGAVMNPQQPKLAPIPPARNQQEMRIGPVPPQNFTP
HGSGLNIGAGHPMPNTYNHAAGSQTFSSNVPMRPSPRILGSPDLTNLSPVEVYRQQHEVN
ATGDNVPAPFMTFEATGFPPEILREIQFAGFSSPTPIQAQTWPIALQSRDIVAIAKTGSG
KTLGYLLPAFIHLKRCRNNSQTGPTVLVLAPTRELATQIQDEAIKFGRTSRISCACLYGG
APKGPQLKDIERGADIVVATPGRLNDILEMKKINFRQVSFLVLDEADRMLDMGFEPQIRK
IVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELEANKSITQYVEVVPQM
EKQRRLEQILRAQERGSKIIIFCSTKRLCDQLARSIGRTFGAAAIHGDKTQGERDWVLNQ
FRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFS
DQDWKYAADLVKVLEGANQRVPPEVRDLATRGGGGGFNRGHGGGGRWDSGGRGARDDFGG
RGGRNDFGGRGGRNDFGGRGGRNDFGGRGNRGRGFGGPGGRGGGGRGGGGGGRGRHDRGM
HDRYDNMDGRGRYDNRRGGGDRNRGRSYSPSPDRVRTWDYDRSRSRSRSRSQSWSRSPSR
SRSRSRSYERPERTSERTSGWDVVQNPPTAVIGAGVQNPPPVAAFGAGVQNPPPAAAFGG
GVQNPLPAAAYEAPPPSQMSPMSPGPNGAPFPIDEPARKPLVPENPILGGSEPVADSSQF
PVAGQ
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggcaactacggagtcagctccaacttcatcagggccgcgctacgcacctgaggatccc
agtcttccgaaaccttggaagggattaattgatggaagcagtggcaatttatattactgg
aatcctgaaacaaatgttactcaatatgagaagccagctgccatgactcctccattgccg
gctggtcctcctcccacgactgccacaccgaagctggcaccaatacctgtggcccgcaca
ctgcaaccaaatggcatgctttctcacccggggcagcaaatgcttcagctgccggggcag
cagacaccacaacagctgggacagcagacgccaccccttcagctggggcagcagatgccg
cagcaacaagggcaacaaatgctgcagcaacaagggcagcaaatgccgcatcagcaaggg
ccacaaatggcacagcagcaagggcagcattttccgcatcagcagatgcatcaaatgcca
catcagcaaatctcttttgctcagggacagcaaatcacacaacagcagatgcagcaaact
gcgcatccacaggggcagcagttcccccctcagcaagggcagcaattcgggtacatgcag
agagaggaaattggatttcaacaaggaaagccagctgggttttctttatctcattcttct
gttcacaatctgccacctggatcccatccagttcagattccgcaaatgggcgttcactcg
gcccacacagaacaaccgggcagctcttctagtaacttacagcaacagggtgcttctttg
gttcagttgcagcagtcagggatggattctgtccaccgtcaaccaatgggtgggccgatg
gttccaaatcagacagggcaagtgatggctcataatcagcaaggtggagggcctcctatg
ggattcaagatggggtatgaagaagatcctcgtggaagatctaacaatgaattttatttc
aatagtgggaagggtggggctgtaatgaatcctcagcagccaaaacttgcacctattccg
ccagcacgcaatcagcaggaaatgaggattggtcctgttccgcctcaaaatttcactcct
catggcagtggcttaaacattggagctgggcatccaatgcctaacacgtacaatcatgct
gctggcagtcaaacattctccagtaatgtgcctatgaggccatcaccaaggattcttggt
tcgccagatctgacaaatctctcacctgttgaggtctaccgacaacaacatgaagtgaat
gcaacgggagacaatgtaccggcaccatttatgacatttgaagccactggtttccctcca
gagatacttagagagatacaatttgctggtttttcttctccaacaccaatacaagcgcag
acatggccaattgcactacagagtagggacatagtggccattgcaaaaacaggttctggg
aagaccttgggctatctcttacctgcttttattcatctgaagcgctgccggaataattct
cagactggccctacggtgttagttttggctccaactcgggagcttgccactcaaatacaa
gatgaggcaatcaagtttggtagaacttcaaggatatcttgcgcatgcttgtatggaggg
gctccaaaaggccctcaactgaaagatatagagcgaggagcagacattgttgtagctaca
cctggtcggcttaatgacatccttgagatgaagaagatcaacttccgccaagtttctttt
cttgtgcttgatgaagcagaccgtatgcttgatatgggttttgaacctcagatccgtaaa
atcgtaaatgagattcctcctcgccgacagactctcatgtacacagcaacctggcctaag
gaggtgaggaaaatagctggagatttattggtgaatcctgtccaggtcaacattggtagt
gttgatgagcttgaagcaaataagtccatcacacagtatgttgaggtggttccacaaatg
gagaagcaaagacgtttagagcagattcttagagctcaggagcgtggatccaagatcatc
atcttctgttcaacaaagaggttgtgtgatcagcttgcccgcagtattgggcgtactttt
ggtgctgctgcaattcatggtgacaagacacagggtgagagggattgggttttgaaccag
ttccgcagtggcaaatccccaattttagttgcgactgacgttgctgctcgaggacttgac
atcaaagacatcagggtggtgatcaactatgacttcccaacggggattgaggattacgtc
catcgaattggaaggactgggagagccggtgctactggggtatcatacacattcttctct
gaccaggactggaagtatgctgcagatctggtgaaagtcctggagggagcgaaccagaga
gtcccacctgaagtgcgggacttggctacacggggcggtggtggaggtttcaataggggc
catggcggaggcggcagatgggattctggaggccgaggtgcgagagatgactttggtggg
cgtggtggccgaaatgactttggtgggcgcggtggtagaaatgactttggtgggcgcggc
ggcagaaatgatttcggtgggcgcggaaaccggggaagagggtttggtggtccaggtggt
cggggtggaggtggtcggggtggaggtggaggtggtcggggtcggcatgaccggggcatg
catgaccggtatgacaatatggatggacgtggccggtatgacaatcggagaggtggtgga
gacaggaatagaggccgtagttacagtccaagtccagatagagtgcggacatgggattat
gacagaagccggagcaggagccgcagccgcagccaaagctggagtcgcagtccaagccgc
agccgcagccgcagccgaagctacgagagacctgagagaacatctgagagaacatccggt
tgggatgttgtccagaatcctcctactgcagtgattggagctggagtccagaatcctcca
ccagttgctgcatttggagctggagtccagaatcctcctccggctgctgcatttggaggt
ggagtccagaaccctctgccagctgctgcgtatgaagctcctccaccatcgcagatgtca
cccatgtctcctggcccgaatggggccccatttccgattgacgagcctgcaaggaaaccg
ctggtgcctgaaaatccaatcctcggcggcagtgagcctgtagccgactcgagccaattc
ccagtggctggtcagtga
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integrated database retrieval system
