Magnolia sinica: 131226660
Help
Entry
131226660 CDS
T09699
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
msin
Magnolia sinica
Pathway
msin03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131226660
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
msin01002
]
131226660
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msin03021
]
131226660
03036 Chromosome and associated proteins [BR:
msin03036
]
131226660
Peptidases and inhibitors [BR:
msin01002
]
Metallo peptidases
Family M1
131226660
Transcription machinery [BR:
msin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
131226660
Coactivators
SAGA/TFTC/STAGA complex
131226660
Chromosome and associated proteins [BR:
msin03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
131226660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
HEAT_2
Peptidase_M1_N
Motif
Other DBs
NCBI-GeneID:
131226660
NCBI-ProteinID:
XP_058078256
LinkDB
All DBs
Position
15:51687142..51795692
Genome browser
AA seq
1389 aa
AA seq
DB search
MAKPRKQKAEDQRAENSGAVVRHQKLCISVDMSNRRIYGYTELKVVVPESGRVGLHADNM
TIDCISVDGEPADFEFLPHYQLVEDEQKWRSVSCTNSAADAACSSYISFLDKEVAPNLFI
SCCESVKSASDPQRQANGEDSSRYSCGDSKQAHTGNNGHAMHENVKSVRIDYWVDKAETG
IHFKDNVLHTDNQIRRAHCWFPCIDSSLQRCCYDLEFTVDANLVAVSNGTLLYQVLSKDN
PPRKTYVYRLSVPVTARWISLAVAPFEILPDRHNGILSHICLSSSISKLQNTVGFFYSTF
SHYEDYLSTSFPFGSYKHVFITPEMAISPMSLGASMCIFSSQILFDEKVIDQTIDTRIKL
AYALARQWFGVFITAEAPTDEWLLEGLAGFLTDSFVKRFLGNNEARYRRYKANCAVCKAD
VNGGTALSSSAASTDLYGTQCIGLYGKIRSWKAVAILQILEKQMGPESFCKILQAIISRA
KNTTRSLRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGSCGCPVLRMGFSYNKRRNMIE
LAVLRGCTAAADSTISESNGNPDKETREGDAGWPGMMSIRVHELDGMYDHPILPMAGETC
QVLEIQCHSKLSAKRIQKHKKGSKPDGSDDNVDLAPTLDMRSSAESPLLWLRVDPEMEYL
AEIQFHQPVQMWINQLEKDKDVVAQAQAIAILETLPHHSFSVVNALNNFLTDSKAFWRVR
IEAALALAHTASEETDYAGLLHLIKFYKSRRFDATIGMPRPNDFHDFSEYFVLEAIPHAI
AMVRATDQKSPRDAVEFVSELLKYNDNNGNPYSDVYWLAALVQSIGELEFGQQSIQLLSS
LLKRIDRLLQFDRLMPSYNGILTISCIRALTQIALKFSASLALDRVFDLIKPFRNFETAL
WQVRIEASRALLDLEFNCKGIDEALSLFMIFIEEEPSLRGQVKLAVHMMHLCQIRSGSRA
GDPINSSTLVALLCLLESRKSFNNVVLRHHLFCILQILAGRPPTLYGIPRIKVQPTIDVE
HQAVNVEHPSVNAGHPAVNAEHPTVNADACSEPGSEPLEAEAKPAPLKLKLSKTQEPLVE
APPSNILPDYLPVPDPPKEADTVSNGSERRVAIVKIRVKPQPATSGRADNVDNAVDNSRG
AHNETEVGPSSSVSVDAPPRVTNELVSTSHQNLEEANSHDHGSRMTASIGSAKFFNDDEA
GKELQCTADSRKGGLADDQLWPSIKSINTGEAELQKYASVQSLSVGKRDDDGASLAKEDW
KGKKEKKEKKREKKRKREGKAGEKSHQDDPEYLERKRLKKEKRQREKEMGKLKSGEQRVF
SADLQNLARTVEPQVKATTSVGPRKLEETVESKMSMGGGETGLGATEATKGSSVHKLRIK
LKSRTISNL
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcctcggaagcagaaggccgaggatcagagagctgagaactcgggcgctgtc
gtccgccatcagaagctctgcatctccgtcgacatgtctaaccgccgcatttacgggtat
actgaactgaaggttgttgtaccagagagtgggcgtgttggattgcatgctgataatatg
accatcgattgtatatctgtagatggagaaccggctgactttgaattcttaccacactat
caactcgttgaggatgaacagaaatggcgttccgtatcatgcactaattctgctgctgat
gctgcatgctcgtcatatatctcttttctagataaagaagtggctcccaatctattcatt
tcgtgttgtgagtcagtgaaatcagcaagtgacccacagcggcaagcaaatggggaggac
agttcacgatactcatgtggtgatagcaagcaagctcatactggcaacaatggacatgca
atgcatgagaatgtgaaatcggttcgcattgactattgggtagataaagcagaaacgggc
attcatttcaaggacaacgtgctacacactgataaccagataaggcgtgcacactgctgg
ttcccttgtattgatagtagtttgcaacgttgctgctacgatctggaatttacagttgat
gctaatcttgtggctgtcagcaatggaaccttactttatcaggtcttgagcaaagacaat
cctccacgcaaaacatatgtttatagattaagtgttcctgttactgccaggtggatatca
ctagcagtagcaccattcgaaattcttccagatcgccataatggcattttatcacatata
tgcttgtcgtcaagcatttcaaagcttcaaaatacagtcgggtttttctatagtacattc
agccattatgaggattacctttctacttcatttccatttggttcctacaaacacgttttc
attacccctgaaatggctatttcccctatgagcttgggtgcctcaatgtgtatcttcagt
tctcaaattttatttgatgagaaggttattgatcagacaattgatactaggatcaaactt
gcatatgcccttgcaaggcagtggtttggggtcttcataactgctgaggcaccaactgat
gaatggttactggaaggtcttgctggttttcttactgattcatttgttaaacgatttctt
ggaaataatgaagcacgttatcgtcgttacaaggcgaactgtgccgtttgtaaggcagat
gttaatggtggaactgctttgagctcctctgcagcttctactgacttgtacggaactcaa
tgcatcggtttatatggaaaaattcgatcatggaaggctgttgcaattcttcaaatcttg
gagaagcagatgggtcctgagtcattttgtaaaattctgcaggcaataatttccagggct
aaaaacacaacccgttcattaagaactcttagtacgaaagagttcaggcattttgctaat
aaggttggaaatcttgaacgtccatttctgaaagaatttttcccccgctgggtgggatct
tgtggatgtccagtcctaaggatggggttttcctacaacaaacggagaaatatgattgag
ttagctgttcttcggggttgcactgcagcagcagattcaactatatcagaatccaatggt
aatcctgataaagaaacccgagaaggtgatgccggatggcctggaatgatgagtatccga
gttcatgaacttgatggaatgtatgaccatccaattttgcctatggctggagaaacttgc
caagtgcttgaaatacagtgccactcgaagctttctgcaaaacgcattcagaagcataag
aagggctcgaaacctgatggctctgatgacaatgttgatcttgctcctactctggatatg
cgttctagtgcagaatcccccttgctctggctgagagtggacccggaaatggagtacctt
gctgaaattcagtttcatcaacccgttcagatgtggataaatcaattagagaaggacaag
gatgttgttgctcaggcacaggcaattgcaatactagagactttaccgcatcattcattt
tcagttgttaatgccctaaataatttcctcactgactcaaaggcattttggagagtcaga
attgaagctgctttggcattggcacatacagcttctgaggaaactgattatgctggttta
ctccatctaataaagttctacaaaagtcgaagatttgatgcaaccattggaatgcctagg
ccaaatgacttccatgatttttctgagtactttgttcttgaggctattccacatgcaatt
gcaatggttagagcaacggaccagaaaagtccaagagatgcagttgaatttgtttcagaa
ctgttaaagtataacgataacaatgggaatccttactctgatgtctactggcttgctgca
ttggtccagtccattggggaacttgaatttggacagcagagtattcagcttttatcatca
cttctcaaacgcattgatcggctactgcaatttgataggctaatgcccagctataacggg
atcttgacaatcagctgcatccgcgctctcacgcagattgcattgaagttttcagcctcc
ttagcacttgatcgtgtatttgatcttattaaaccattccgcaattttgagacggctctt
tggcaagttcgaattgaagcaagtagagcacttcttgatcttgagttcaactgcaaaggc
attgatgaagcattgtctcttttcatgatcttcatagaggaagagccgtctttacgagga
caggtgaagttggcggtgcacatgatgcacttgtgccaaataagaagtggctccagagct
ggtgatcctataaatagctccacgcttgtggccttgctttgtctgcttgaaagccgcaaa
tccttcaacaatgtcgtccttcggcatcacttgttctgtattctacaaattcttgcgggg
aggcctccaacactatatggtatcccaagaatcaaagtacagcccaccatcgatgtagaa
catcaagccgtcaatgtagaacatccctctgtcaatgcaggacatcctgccgtcaatgcc
gagcatcccactgtaaatgctgatgcttgcagcgaacctggcagcgaaccacttgaagcc
gaggcaaaacctgccccattgaagctaaagctatccaaaactcaggaacctcttgtggaa
gcacccccttcaaacatcttgcctgactatttaccagtcccagatcctcctaaggaagcg
gacactgtttctaatggatctgaacggagggttgccattgtgaagatcagggtcaagccg
caaccagcaacatccggtagagcagataatgtcgataatgcagtggacaactctagaggt
gctcataatgaaactgaagtgggacccagcagttctgtgtctgttgatgcgccaccgagg
gtaacaaatgagctggtgagcaccagccatcaaaatcttgaagaagccaactctcacgac
catggttctcggatgactgcgagcattggcagtgcgaaattcttcaatgacgatgaggcc
ggcaaagaactgcagtgcactgctgactcaaggaaaggtggcctggctgacgatcagttg
tggccgagcatcaagtctattaatactggagaggcggaactgcagaagtatgcatctgtt
caatctctttcagttggtaagcgggacgatgatggagcgtcactggccaaggaagattgg
aaaggaaagaaagagaaaaaggagaagaagagggaaaagaaaaggaagcgggaagggaaa
gcgggggaaaagagtcaccaggacgatcccgagtacttggagcggaagcgtttgaaaaag
gagaagaggcaacgcgagaaagagatggggaagttgaagagtggagaacaaagagtgttt
tcagcagatttgcagaatttggcaaggacagtcgaaccacaagtgaaggcaactacatcg
gtggggccgaggaaattggaagagacggtcgagtccaaaatgtcaatgggtggtggggaa
accggacttggggctactgaggctacgaagggaagttcagtacataagcttcgaatcaaa
ttgaagagtcggactatcagcaatttgtaa
DBGET
integrated database retrieval system
