Magnolia sinica: 131226688
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Entry
131226688 CDS
T09699
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
msin
Magnolia sinica
Pathway
msin03030
DNA replication
msin03420
Nucleotide excision repair
msin03430
Mismatch repair
msin03440
Homologous recombination
msin03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131226688
03420 Nucleotide excision repair
131226688
03430 Mismatch repair
131226688
03440 Homologous recombination
131226688
03460 Fanconi anemia pathway
131226688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msin03000
]
131226688
03032 DNA replication proteins [BR:
msin03032
]
131226688
03400 DNA repair and recombination proteins [BR:
msin03400
]
131226688
Transcription factors [BR:
msin03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131226688
DNA replication proteins [BR:
msin03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131226688
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131226688
MMR (mismatch excision repair)
131226688
DSBR (double strand breaks repair)
HR (homologous recombination)
131226688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
TMEM219
zf-like
DUF223
DUF5651
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
131226688
NCBI-ProteinID:
XP_058078300
LinkDB
All DBs
Position
15:72576150..72580367
Genome browser
AA seq
633 aa
AA seq
DB search
MAVNLTANAIAAIEGGDVNLKPLVQVLEIKAIGNSQDRYRIVISDGISTQQAMLAAQLSD
RVKGGKLQKGSVIQLLDYICSIIQNRKIIVVLNLETIIADCDIIGNPKLPMQSESPQKAL
SRDNSECLRGELFNGVSGSVPKSRNNSNAASNPANKMQSFRPTVQPSYQPPPNYKNHGAI
IKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDADGGEIR
VTCFNSIVDRFYDSVEVGRVYLISKGSLKPAQKNFNHLNNEWEIFLESTSTVDICPDEDS
SIPKQQFSFRPINEIEHTENNSIVDMIGIVISVNPSVTILRKNGMETLRRILNLKDESGR
SIELTLWGDFCNKEGRELQELLDSRFFPVLAVKAGKVNDFSGKSVGTISSTQLFLNPDFP
EAHSLRDWFDRVGKNASAQSISRDIPGGPRNEIRKTVSQIKDEGLGRADKPDWVTVKATI
SFIKTDNFCYTACPLMVGDRQCGKKVMRSGNGNWHCERCDQDIQECEYRYLLQAQVQDHT
GLTWVTAFQESGEEILGCSAKELYLLKHIEEDDIRFGEVVRGSLFKQYLFRLKIKEETYG
DEQRVKITVVKADKVNFSVESRYLLDLISRTSL
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgaatctcacggccaatgcgatcgcagccattgaaggcggcgacgtgaatctg
aagccgcttgtccaggtcttggagatcaaggcgattgggaactcccaggaccggtaccgg
atcgtcatatccgacggcatctcaacgcagcaggcgatgctcgcggcccagctcagcgac
cgcgtgaaaggcgggaagctgcagaagggatccgtcattcagttgctcgattacatctgc
agcatcattcaaaatcgaaagattatcgttgttttgaacttggagactataattgcagat
tgtgatatcatcgggaatccaaaacttcccatgcagtcagagtcgcctcaaaaagctctg
tctcgtgacaactcagaatgcctaagaggagaattgtttaatggtgtatccgggtctgtt
cctaagtcaaggaataactctaatgcagcatcaaatcctgctaacaagatgcagagcttt
cgcccaaccgttcaaccttcctaccagcctcctccgaactacaaaaatcatggagcaatc
ataaagaacgaagctcctgctcgaataatccccattgctgctttgaatccttatcagggg
cggtgggcaatcaaggcgagagtgaccgcgaaaggagatctccggcgctacaacaatgct
aggggagatggtaaggtcttttccttcgacctcctcgatgctgatgggggagaaatacga
gtgacctgtttcaattccattgtcgaccgattctatgattctgtcgaggtaggtagggtt
tacttgatatcaaagggaagcttaaaaccagcacagaaaaatttcaaccatcttaacaat
gagtgggaaatatttttggaatcaacatcgacagtggatatttgccctgatgaagacagc
tcaataccgaagcagcagttttccttcagacccatcaatgaaattgagcacacggagaac
aattccattgtggatatgattggcattgtaatatctgttaatccatcggttactatattg
agaaagaatggtatggaaactctgagaagaattttgaatctgaaggatgagtctggccgg
agcattgagctcaccctctggggtgatttttgcaacaaggaaggtcgggagctgcaggag
ctgctcgattccaggtttttcccagttttggctgtgaaagctggtaaggtaaatgacttc
agtgggaaatcagttgggacgatttcctccacccagcttttcttaaatccagattttcct
gaagctcatagcctcagagattggttcgatagagtaggaaagaatgcttctgctcagtcc
atctccagagatatccccggtgggccacggaatgagatccgtaaaacagtatcgcaaatc
aaagatgaaggccttgggagggcggataagcccgattgggttacagtgaaggcgacgatt
tcattcataaagacggataacttctgttacacagcatgtcctttgatggttggggataga
cagtgtggcaagaaggtgatgaggtcgggaaatggaaactggcactgtgaaaggtgcgat
caggatattcaggaatgtgaatatcggtatctgcttcaggcgcaagttcaagaccatacg
ggactgacttgggtgacagcatttcaggagtcaggggaggagatcttgggttgctcggca
aaggaattgtatttgttgaaacacatagaagaagatgatatcaggtttggcgaggttgtc
cgcggcagtctcttcaagcagtatcttttccggcttaaaattaaagaggaaacgtatggc
gatgagcaacgggtgaaaatcaccgtcgtgaaggcggataaggtgaatttttctgtggag
agcagatatctactcgatttgatttcaagaacttccctctag
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integrated database retrieval system
