Magnolia sinica: 131226725
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Entry
131226725 CDS
T09699
Name
(RefSeq) DNA repair protein RAD4 isoform X1
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
msin
Magnolia sinica
Pathway
msin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
131226725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msin03400
]
131226725
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
131226725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
131226725
NCBI-ProteinID:
XP_058078379
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All DBs
Position
15:58650858..58669010
Genome browser
AA seq
1006 aa
AA seq
DB search
MRTRNQSKRSQEPSGSENVVKGLDDSETRGPMKLQHENVLGTLTNISKQAVGRFLRQGSS
RKASRGKRQEGSLSHGESNDMIEEEMQKADGELFSSAVVAGRDAKGRTPTGEDAEGIVHH
SFPAKTEETDEPDWEDGSVSISDVRENLSNNLEREVTVEFSKSPSSAKRKVIRRASVEDK
ELAELVHKVHLLCLVGRGRLVDRACDDPLIQASLLSLVPTQLQDMVKVPKMKANALTALV
DWFHGNFHVRNASSSERSFTSSMAYALETREGTAEEVAALSVALFRALNLTARFVSILDV
ASLKPEADLPECSNQDINKVDTRIFSKGLASSNHISAVYPGQSSSQKTNTNGAIGHESPQ
RCGQQIRESDLTCKSNKSKSLLVTCQMNDQTSDSIASNACNDSNEVLATDHDKGSKRKGD
VEFELQLEMALAATAAGACESTLDLDSKDVNGSSSKITSPFKIVKRIKSEDSPVSAKGSS
GAVWSRKAGPLMYWAEVFCCGETLTGRWVHVDAANAIIDGEQKVEAAAAVCRKSLRYVVA
FAGNGAKDVTRRYCMKWYTIASQRVNSQWWGQVLVPLKQLESGATEGVVPLEMQLENASS
ELHKLKAVKVSDSLEVYSNETAGSSSAREHLPSLTQVFGIEASKLLGMNIDVKSPIQSPG
VGSRSSLEDMELETRALTEPLPTNQLAYKNHQLYAIERWLTRYQILHPKGPILGYCSGHP
VYPRTCVQTLQTKHRWLREGLQVKENECPAKVVKRSQKSKMSSEPSISEEDDGEGTIELY
GKWQMEPLQLPHAVNGIVPKNERGQVDVWSEKCLPPGTVHLRLPRLVPVVKRLEIDFAPA
MVGFEFRNGRSLPIFEGLVVCTEFKHAIMEAYAEEEERRQAQEKKWNESQALSRWYQLIS
NMVTRRRLKNSYEVGSTSQAHHNLLHQKDDQCMAQICDHRGSDLSGEFHQEYVQDHGGSA
LDYRPAAAFASDHEHVFPVENQSFDEESSVRTKWCPCGFSIQVEEM
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgcgaactcgaaaccaatccaaacgctcccaagagccgtctgggagcgagaatgtggtg
aaaggcctagatgattcagaaactaggggccctatgaaattgcaacacgaaaatgtgtta
ggcactctcaccaatatatcaaagcaggccgtaggcagatttttgagacaaggtagttcg
cgcaaggcatcacgtgggaagagacaggagggctccctctctcatggagaatctaatgac
atgattgaggaagagatgcaaaaagcagatggagaacttttttctagcgctgtagttgct
ggaagagatgcaaaaggaagaacacccacaggggaagatgcagagggaattgtccatcac
agtttccctgcaaagacagaagaaacagatgaaccagattgggaagatggttctgtttcc
atttcagatgttagagaaaatctttcgaataatctggagagggaggtgactgttgaattt
agcaagtcaccgtcttctgctaaacggaaggttattcgaagggcttctgttgaagacaag
gaattagctgagcttgtgcataaggttcatttgctgtgtctagtaggacgaggaaggtta
gttgaccgtgcttgcgatgatcctctcattcaggcttccttactttcacttgtaccaaca
cagttacaagacatggtaaaggtcccaaaaatgaaggcaaatgcattgactgcccttgtc
gattggtttcatggtaactttcatgtccgaaatgcaagcagttcagagagatcctttaca
tcaagtatggcttatgctcttgagactcgtgaagggactgctgaagaggttgctgcgtta
tccgtggcactattcagagctctcaatttaacagctaggtttgtatccattctggatgtg
gcttccctcaaaccagaagccgacctgcccgagtgttcaaaccaagacataaataaggtg
gacacgaggatattttctaaggggctagccagttcgaatcacatttctgctgtatatcct
ggtcagtcttcatcgcagaaaacaaataccaacggagccattggtcatgaatctcctcaa
agatgtggccagcagatcagagaaagtgacttaacctgcaagagcaataagtccaaaagt
ttacttgtgacctgtcagatgaatgatcagacatcagattcaatagccagcaacgcatgc
aatgatagcaatgaagtacttgccactgaccatgataaaggatcaaaaaggaaaggggac
gttgagtttgaactacagctggaaatggctcttgctgcaactgcagctggggcttgtgaa
agtactctagacctggattcaaaagatgtaaatggcagttcatcaaagattacttctcca
ttcaaaatagtgaagagaattaaaagtgaagattctccagtttcggctaaggggagctca
ggggcagtttggtcgagaaaagcgggacctcttatgtattgggcagaagtcttttgttgc
ggagagaccttgactggaaggtgggtgcatgttgatgctgcaaatgcaattattgacggt
gagcaaaaggtagaagctgcagctgctgtctgtagaaagtcactgagatatgttgttgct
tttgctggaaatggtgctaaagatgtgactcgcaggtattgtatgaagtggtacacaatt
gcatcgcagcgggttaattcgcaatggtggggccaagtgttggtgccactgaagcagtta
gagtcaggcgcaactgaaggtgtagttcctcttgaaatgcaattggagaatgcttcatct
gaactacataagttaaaggccgtgaaagtatctgattctcttgaagtatattccaatgag
actgccggaagttcatcagcacgagaacatcttccaagcttgactcaagtctttggcata
gaagcgtctaaattgctaggcatgaacatagatgtgaaatctcccattcagagtcctggg
gtaggtagtagaagctcgcttgaagatatggagctggaaacaagggctttaactgagcct
cttccaactaatcaactggcctacaaaaatcaccaactttatgctattgaaagatggctt
accaggtatcaaatacttcatccaaaaggtcctatacttgggtactgttctgggcatcct
gtctaccctcgaacttgtgtccaaacactacaaacaaaacacagatggctacgggagggc
ttgcaagttaaagaaaacgagtgtcctgcaaaggtggtgaaacgttcccaaaagtcgaaa
atgtcgtctgaacctagcatttctgaagaagatgatggtgaagggactattgagctttat
gggaagtggcaaatggaaccattgcaacttcctcatgctgtaaatgggattgtaccaaag
aacgagcgcggccaggttgatgtgtggtctgagaagtgcctcccacctgggacagtacac
ttgaggttacccagactagttcctgttgtgaagaggctggagattgattttgcacctgcc
atggttggatttgagttccgtaacgggcgttcactacccatctttgaagggcttgtggtc
tgtacagagtttaaacatgctatcatggaggcatatgcagaagaagaagagaggagacaa
gcacaggagaagaaatggaacgaatctcaagctctttctaggtggtatcagcttatttca
aacatggtaacacggcgaaggttgaaaaactcttacgaggtcggttcgacttcacaggcc
caccacaaccttctccaccagaaggacgatcaatgtatggcccagatctgtgatcatcgt
gggagtgacctttcaggtgaattccaccaggaatacgtacaggaccatggagggtctgcg
ttggattatcggccagcagcagcatttgctagtgaccatgaacatgtatttccggtagaa
aaccagagttttgacgaagagagcagtgtacggaccaagtggtgcccatgtggattttca
atccaagtggaggagatgtag
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