KEGG   Magnolia sinica: 131226773
Entry
131226773         CDS       T09699                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
msin  Magnolia sinica
Pathway
msin03020  RNA polymerase
msin03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:msin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    131226773
  09124 Replication and repair
   03420 Nucleotide excision repair
    131226773
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:msin03021]
    131226773
   03400 DNA repair and recombination proteins [BR:msin03400]
    131226773
Transcription machinery [BR:msin03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     131226773
  RNA polymerase III system
   RNA polymerase III
     131226773
  RNA polymerase I system
   RNA polymerase I
     131226773
DNA repair and recombination proteins [BR:msin03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      131226773
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N OB_RNR_1st SWIB
Other DBs
NCBI-GeneID: 131226773
NCBI-ProteinID: XP_058078479
LinkDB
Position
15:15264177..15275965
AA seq 208 aa
MSSAMDEDASRLFRIRRTVMQMLRDRGYLVGDFEINMTRSQFIDKFGENVKREDLVISKA
KRNDSGDQQIYVFFPEEQKVGVKTMKTYTNRMKSETVYRAILVVQQNLTPFAKTCISEIS
GKFHLEVFQEAELLVNIKEHVLVPEHQVLTTEEKKTLLERYTLKETQLPRIQLTDPIARY
YGLKRGQVVKIIRPSETAGRYVTYRYVV
NT seq 627 nt   +upstreamnt  +downstreamnt
atgtcgtctgcgatggacgaagatgcgagcaggctgttcaggatacgacggacggttatg
cagatgctgagagacagagggtatttggtaggagatttcgagataaacatgacgagatct
caatttatcgataaattcggagaaaacgtgaaacgagaagatctcgtcatcagcaaagcc
aagcgcaacgactccggcgatcagcagatatatgttttctttccggaggaacaaaaggtc
ggtgtgaagacaatgaagacctacaccaatcgcatgaaatcagaaactgtgtacagagca
atattagttgtccaacagaacctgactccctttgcaaaaacatgcattagtgaaatttcc
ggaaaatttcatttggaggttttccaggaggcagagctgcttgtcaacattaaagagcat
gttcttgttccagagcatcaggtgcttacaactgaagaaaagaagactttgttggagcgg
tatacactaaaagaaactcagcttccccggattcaactgactgacccgattgctagatat
tatggcctcaagcgcggacaagttgtgaagatcatccgaccgagtgagaccgcaggcaga
tacgtcacctaccgatatgttgtctga

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