Magnolia sinica: 131226961
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Entry
131226961 CDS
T09699
Name
(RefSeq) RNA-dependent RNA polymerase 1-like
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
msin
Magnolia sinica
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
msin03036
]
131226961
Enzymes [BR:
msin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
131226961
Chromosome and associated proteins [BR:
msin03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
131226961
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RdRP
PH_RDR2
RRM_RdRP1_2
RdRP_helical
RDR6_2nd
PH_fung_RdRP
PH_met_RdRP
PH_TRF2_HOY1
Motif
Other DBs
NCBI-GeneID:
131226961
NCBI-ProteinID:
XP_058078636
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All DBs
Position
15:63906006..63944559
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AA seq
861 aa
AA seq
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MGGGTIQVLGFPSNVCAENVKEFFDRYTGEGTVYAVKVRPPKTIKPRSKAFVIVQFTMSS
CAKDITSMASQQQLSYEGSYLETRDAEHDIEPKPRTKVFDLEHVTLHFGCQITDRSFSAL
WSVSDVTVNFGFRQQKLKFLLSCHSIHYKLELFYGSIRQIQLRHSHEQAAKFLLIQLQAA
PRIYKKPPVTPQFIYEDPKLNYFKDKDISGNQWVRATDFTPSSSIGQSSALCLEVPYSCK
LPDIHANFVNYEEIEGQFVLESGFSFSHGLDLVPIVGPCQRIQLPYTILFKINSLVQNGI
IMGLTLDDDFFRLVDPRLVPIHYVEHALESLSHLKDSCFQPAKWLHEQYGKYRASQHPPK
STTISLDPGLVYVYRVQITPTKVYFCGPEVNVSNCVLRQYAEDIDNFLRVTFVDEDLDKI
QSTDLIPRPVLENGEQHTGVYKRILSTLRNGIVIGDKKFEFLAFSSSQLKENSAWMFAAR
SGLDAAGIRKWLGDFSKIRNVAKYAARLGQSFGSSKESLSVDRHEIEHIPDIEIKNKKYN
FSDGIGKISADFAKRVAIKCDIRGLTPSAFQIRYCGYKGVVAVDPVSPYKLSFRKSMLKY
ESDNAKLDVLGWSKYQPFFLNRQLITLLSTLGARDQVFEMKQKEAVEQLDMILTDPIRTQ
EVLEVMSPGEDNQVLGEMLICGYKPDAEPFLSMMLQTFQASKLLELRTKTRIFVPKGRSM
MGCLDETRTLKYGQVFVQISCVGHKQFDDNDPFTFGRNESNQRSIVIKGRVLVAKCPCLH
PGDVRVLRAVNVPALCHMVDCVVFPQKGNRPHPNECSGSDLDGDVYFVSWDSELIPPRQI
PPMEYIAKPPVLTRSLSSLRG
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgggaggtgggacaattcaggttttgggtttcccttcgaatgtgtgtgcagaaaatgtg
aaggagttttttgatagatacacaggtgaggggactgtttatgcagttaaggttagaccg
cccaagactatcaagccaagatcaaaagcattcgtgatcgttcaattcacgatgagtagt
tgcgccaaagatataacctctatggctagtcagcagcagctttcatacgagggttcttac
cttgaaacccgagacgcagagcatgatattgagccgaagccaaggaccaaagtgtttgac
ttggaacacgtgactctgcatttcggctgtcagattacagacagaagtttttctgctctt
tggagtgtcagcgacgttacagttaactttggtttccgtcagcaaaaattgaagttctta
ctctcttgccacagcatccactataagctcgaactcttttatgggagcattaggcaaatc
cagctgcgccactcacatgaacaagctgctaagtttctcttgatacagttgcaagctgct
cctcggatttacaagaagcctccggtcactccacaatttatatatgaagatccaaagtta
aactacttcaaggacaaggacatatcaggcaatcaatgggtcagagcaactgatttcacc
ccgtcttcttcaatcggccaatcttcggcgttgtgtttggaagttccttatagctgcaag
cttcctgatatccatgcgaactttgtaaattatgaagaaattgaaggccaatttgtcttg
gagagcggtttttccttctctcatggtttggatcttgtccccattgttgggccttgccag
aggattcaattaccatatacgattctgtttaagataaacagtttggttcagaatgggatc
atcatggggctcacactcgatgatgatttctttaggttggtcgatcctcgtctggtacct
attcactacgtggaacatgcactggagagtctatcacatctaaaagattcctgcttccaa
cccgcaaaatggcttcacgagcagtatggaaaataccgtgcatctcagcatcctccaaaa
tccaccactatttcattggatcctggtttggtctatgtctacagggttcaaatcaccccc
actaaagtgtacttttgtgggccggaggtcaacgtctcaaattgtgtattacgccagtat
gctgaagatatagataacttccttcgtgttactttcgtcgatgaggatttggacaaaata
cagtcgacagatttgataccgcggccagttctggaaaatggtgaacagcacactggtgtg
tataaaaggatactctccactttgagaaatggcatagttattggcgataagaagtttgaa
tttctcgcattctcttcaagtcagttaaaggagaattccgcatggatgtttgcagcgagg
agtggactcgatgcagctggtataaggaagtggctgggagactttagtaagataaggaat
gtggcaaaatatgctgcccgattaggtcaatcatttggttcatccaaagaaagtttgagc
gttgataggcatgaaattgaacatattcctgatatagagataaaaaacaagaaatataat
ttctcggatggaattggaaaaatttcagctgattttgctaaaagagtggctataaagtgt
gacatcagaggtttgacgccatctgccttccaaattagatattgtgggtacaaaggtgtt
gtagctgtggatcctgtgtctccatataagttgtccttcagaaaaagcatgctcaagtat
gaatcggacaacgcaaaactggatgttttgggatggagcaaatatcagccttttttcctc
aatcgacagttgatcactcttctgtcgactcttggagctagagatcaagtgtttgaaatg
aagcaaaaagaagctgtagaacaactggacatgattttaacggatccgatacgaacacag
gaggtgctcgaggtcatgtctccgggagaagacaatcaggtccttggagaaatgctgatc
tgtggttataagcctgatgccgagccattcctttcaatgatgctgcaaacttttcaggca
tcaaagcttttggaactgaggactaagacacggatttttgttccgaaaggaagatcaatg
atgggatgccttgatgaaactaggactcttaaatatgggcaggtgtttgttcaaatatct
tgtgttgggcataaacagtttgatgataatgatccatttacatttggaagaaatgagtcc
aatcagcggtctattgtgatcaagggtagagtacttgttgctaaatgcccatgtctccac
ccaggtgatgtgcgtgtcttgagggccgtcaatgtcccagctttatgccatatggttgac
tgcgttgtttttccacagaaagggaatagaccgcacccaaacgaatgctcaggaagcgat
ttggatggagatgtatactttgtaagctgggactctgaacttattccacctcgtcaaatc
ccacccatggaatacattgccaaaccgcctgttttgacaagatcactgtcttccttaagg
ggataa
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