Magnolia sinica: 131227450
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Entry
131227450 CDS
T09699
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
msin
Magnolia sinica
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msin03021
]
131227450
03036 Chromosome and associated proteins [BR:
msin03036
]
131227450
Transcription machinery [BR:
msin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
131227450
Chromosome and associated proteins [BR:
msin03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
131227450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Tex_central_region
HTH_44
Spt6_S1
HHH_9
S1
Tex_N
HHH_3
Motif
Other DBs
NCBI-GeneID:
131227450
NCBI-ProteinID:
XP_058079230
LinkDB
All DBs
Position
15:24778214..24835410
Genome browser
AA seq
1947 aa
AA seq
DB search
MGGKAVISDDEDENEIAEEDKRGGGARDNEDVDDDDEEEEGQDEYEKDGFIVDDVDEEEG
DSDKEKHMKKKKRKKRESKKNFALDEDDYELLKDNNVTTFHRPKLGSKNFKRLKKAGRDS
EQVELSGFLDNDEVVKSSRSGQSAEEKLKRSLFGDDEGTPLEDIAEDEEELEEGGDIAEE
DEMADFIVDEEVVDKYSARVRRKPSKIKLRQTAGASSSALQEAHGIFGDVDELLMKRKQG
LVKSGSFHDSGEWSVKNPEDEFEPFILTERYKTEKDDQIQEIDVPERIQLLKEITGHIPT
DDKSIEEESAWIYNQLTMSDMSPFFGNMNLIGEINKEEIGNVLGMLHVQKLDIPFIAMYR
KELCLSLLKDPEQDLVESDDSVERTCTLKWHKKLWAIQNLDRKWLILQKRKTALQIYYNK
RFQEETRRLDDETRLALKRQLFKSVINSLKASESEREVDDVDLKFNLYFPPGEVVVEDGQ
FKRPTHKSLYSICCKAGLWEVARKFGLSSEQFGLLLNLDKMRVDELEDPNETPEEIAANF
TCAIFETPKDVLKGARHMVAVEISSEPCVRKHVRSIFMEHATVSTSPTSDGNTAIDSFHQ
FSGVKWLCDKPLSEFKDAQWLLIQKAEEEKLLQVSIKLPENVHNKLMSDAKDFYLSDGVS
RSAQLWNEQRELILKDSFFNFLLPSLEKEVRSLLTVRSKNWLLMDYGKQLWEKVSVAPYH
QKEKDSGSDNDIVPRVMACCWAPGKPATTFVMLDSSGEMLDVLYAGSISLRSQSVNDQQR
KKNDEQRLVKFMTDHQPQVVVVGAVNLYSTRLKDDIFEIIYNLVEKHSREDGQSMSEMSV
VYGDESLPRLYENSRISSDQLTGQPGIVKRAVALGRYLQNPLCLMATLCGPGREILSWKL
NPLEHFLSPDEKYGVVEQVMIDATNQVGVDINLAAHHEWLFAPLQFVSGLGPRKASALQR
AMLRTGAVFSRKEIPMNGVLKKKVFINAVGFLRVRRNGLATTSNHTIDLLDDTRIHPESY
DLAKKMVKDIYDEGVREEPYDMDDDAQQMVIEHVRYRPKPLKALVIEEYCKSVEERLGTR
KRETLCDIQMELLHGFQDWRSPYREPNPDDVFYMISSETKDTLLVGRIVQATVSRVQSQR
LICELGSGLTGVIFKEDFSDEGDVDLAEKVIEGSTITCKIKVIQRNRYQVLLTSKESELC
KCDQPQSSGNQDPYYDEEKGKLQIEQDKGRKERKGNLHNEQDKGRKEETGILRNEQDKGL
KEGLVKKHFKRRMIVHHRFQNLTADEAIKFLSDKDPGESIIHPSARGPSYLTLTLKVYDG
VYTHKEIVEGGKDHKDITSLLCLGKTLKIGEDTFEDLDEVVDRYVDPLVAYLKVMLGYRK
FQRGSQAEVDELLRVEKAEHPMRIVYCFGISYENPGAFILSYIRSTNLHHEFIGLCHNGY
KFRKQMFAGNNSIDKLVAYFQRHVEDFGPTTGSVAAMVSMKGPGIGGSSGRGSASGGWGG
SAADNDDGSGRGQTNSDWDGSSRPGSGTGGKDYRDGGYTGSGGKHNSERGGGGNRGRYGR
GSSGRGNRDGGSDWGGVSGGGWGDEGGGSGGSWGGGHTSSSGRGGNDRGGGNSRGRGGRR
GNGDWGSGDGGNDSSGKGNVGDGGNVGWGGDGSGGWGGGGNNRGRGGRSNGRGGWGNSDG
GEEGNVGGGGNESGGWGGGGNNRGRGGRSNGRGGWGNSDGGDEGNVGWGGNESGGWGGGG
NNRGRGGRSNGRGGWGGGNSDGGDEGNVDDGANVGWGGDESGGWGGGGNNRGRGGRGRGG
RSNGRGGWGGGNSDGDGRISNGGDAGGRDDGGWGGSDSGGGRRGGRGRGGGRGRNSRGGS
GGGSGHWGSSGGGSGGGWGNEGGSGWGSGSDGNNGGASGASGGQVSGGWAGGNKEGSSGG
GSVGGWGDGAGGHGGGDNSGGNSGWGG
NT seq
5844 nt
NT seq
+upstream
nt +downstream
nt
atgggcggaaaagcagtaatctcagatgacgaagatgagaatgagattgctgaagaagac
aagcgaggaggaggagctcgagataacgaagatgttgacgatgacgatgaagaagaagag
gggcaggatgagtatgagaaggatgggtttatagtagatgatgtagatgaagaagaaggg
gacagtgacaaggaaaagcatatgaagaagaagaagaggaaaaagagagaatccaagaag
aattttgctcttgatgaagatgactatgagttgctcaaggacaacaacgttacgaccttc
catcgtcccaagcttgggagcaaaaacttcaagcgattgaagaaagctggaagggactct
gagcaagtagagctatctggttttttggataatgatgaggtcgttaaaagcagtcggagt
ggtcagtctgctgaagaaaaacttaagcgaagtttatttggtgacgatgaagggacacct
cttgaggatattgctgaagatgaggaagagctggaagagggtggggatattgctgaggag
gacgaaatggcagattttattgtagatgaggaagtagttgacaagtatagtgctcgtgtt
aggagaaaacctagcaaaattaagttgaggcagacagctggagcttcctcatctgcattg
caggaggctcacggcatatttggggatgttgatgaacttctgatgaagcgcaaacaaggg
cttgttaagagtggtagttttcatgattccggtgagtggagcgtaaagaaccccgaagat
gaatttgaaccttttattctcacggagaggtataagactgagaaggatgatcagatacaa
gagattgatgtgccagagaggatccagttattgaaggaaattactggccatattccaaca
gatgataaaagtatagaagaagagagtgcctggatatataatcagctaactatgtctgac
atgtcgccatttttcgggaacatgaatcttattggggaaattaacaaggaagagattggg
aatgtattgggaatgctacatgtgcagaagcttgatattccttttattgctatgtatcgg
aaggagctctgtcttagcctattgaaagacccagagcaagatcttgtggagagtgatgat
agtgttgagagaacctgtacactgaagtggcataagaaactctgggccatccagaacctt
gacaggaaatggttgattctgcaaaaacggaagactgctcttcagatatactacaataag
cgctttcaagaagaaacccggaggcttgatgatgaaacaaggcttgcattgaaacggcag
cttttcaaatcagttattaactcgcttaaagcttctgaatcagaaagagaggttgatgat
gtcgacttgaagtttaatttgtatttccccccaggtgaagttgttgtggaagatggccaa
tttaaaaggccaactcacaaatccctatatagtatttgttgtaaggctggtctttgggag
gttgcccgcaagttcgggttaagttctgagcaatttggattacttctaaacttggacaag
atgcgtgtggatgaattagaggatcctaatgaaactcctgaggaaatagctgccaatttt
acatgtgcaatatttgagacccctaaagatgtgctcaaaggtgccaggcacatggtagcg
gtagaaatcagctctgagccatgtgtcaggaaacatgttcgcagtatcttcatggagcat
gcaactgtttctacaagtcccacttctgatgggaacacggctattgattcttttcatcag
ttttctggcgtgaagtggttgtgtgacaagcccctatctgaattcaaagatgcacagtgg
cttcttatacaaaaggctgaagaagagaaactccttcaagtgagcataaaactgcctgaa
aatgttcacaataaactaatgagtgatgcaaaggatttttatcttagtgatggtgttagt
agatctgctcagctttggaacgagcaacgtgagttaatattgaaggattctttctttaat
ttccttcttccttcactggaaaaggaagttcggtctctgctgactgtgagatccaagaac
tggctacttatggattatgggaaacagttgtgggagaaagtctcagttgctccatatcat
cagaaggaaaaggattctggttctgacaatgacattgtaccaagagtcatggcttgctgt
tgggcccccggaaagccagcaaccacttttgtgatgttggattcatcgggagaaatgcta
gatgtgctgtatgcagggtctatcagtcttcggtctcagagtgttaatgatcagcaacgg
aagaaaaatgatgaacaacgtctagtgaagttcatgaccgatcaccagccccaagttgtt
gttgtgggagctgtgaatttgtattctacacgtttgaaagatgatatatttgagatcatt
tataatttggtcgagaaacattctagggaagatggtcaaagcatgagtgagatgagtgtt
gtttatggtgatgaatctctgcctcgtctctatgaaaattcacggatttcttcagaccag
ttgactgggcagccaggcattgtcaagcgtgctgttgctcttggccgttaccttcaaaat
ccattgtgcctgatggcgacactatgtggaccagggcgggagatcctatcttggaagctg
aacccactagaacacttccttagccctgatgagaagtatggggtggttgaacaggtaatg
atagatgccaccaatcaagtcggagtcgatataaatttggctgctcaccatgaatggctt
tttgctcctttgcaatttgtctcgggtcttggacccagaaaggcatctgctttacagaga
gcaatgctaagaactggtgctgttttcagtcggaaagagattccaatgaatggtgttctt
aaaaagaaagtgtttattaatgcggttggttttctgcgtgtccgtcggaatgggctggct
accactagcaatcatactatagacttattggatgatacaagaattcatccggagtcgtac
gacctggcaaagaaaatggtaaaggatatttatgatgagggtgttcgagaggaaccgtat
gacatggatgatgatgcgcaacagatggtgattgaacatgttagatataggccaaagccg
ctaaaagctcttgttattgaggaatattgtaagagtgtggaggaacggcttgggacgaga
aaaagggagaccctttgtgatatacagatggagttgcttcatgggtttcaagactggcgc
agtccgtatagagaaccaaatccagatgatgttttttatatgatatctagtgaaactaaa
gatactcttctagtgggaagaattgttcaggcaactgtcagcagggtgcaatctcaacgt
ttgatttgtgagcttggatctggtttgacaggggtgatttttaaggaggatttttcagat
gaaggagatgttgatttagctgagaaggtaatagaagggagcacaatcacgtgcaaaatt
aaagtaattcaaagaaatagataccaggtgttactaacttctaaagaaagcgaactttgt
aagtgtgaccaaccacagagttctggaaaccaggatccttactatgatgaagagaagggc
aagttacagatagaacaagataaaggtcgcaaggagaggaagggaaatttacataatgaa
caagataaaggtcgcaaggaggagacgggcattttacggaacgaacaagataaaggtctg
aaggaggggcttgtaaagaagcatttcaagcgaaggatgattgttcatcaccgttttcaa
aatttgacagctgatgaggcaatcaagttcctgtcagacaaggatccaggtgaaagcatt
atccatccaagtgctagagggccatcttatttaactctgactctgaaagtgtatgacgga
gtctatacccacaaggagatagtcgagggtggaaaagatcacaaggacatcacaagcttg
ctttgtcttgggaaaacattgaaaataggggaagatacttttgaggatctggacgaggtt
gtagatcgctatgttgaccccctggtagcctacctgaaagttatgcttgggtaccgcaaa
ttccagaggggctcacaagcagaagttgatgagcttttaagggtggagaaagcagaacat
ccaatgagaatagtttactgttttggcatttcctacgaaaatcctggagcctttatttta
tcatatatacggagtacgaatctgcatcatgaatttatcggtctgtgccacaatggctac
aagtttcgaaaacagatgtttgctggaaataatagcatcgacaagcttgtggcatatttt
cagagacatgttgaagattttgggccaacaaccggatcggtagctgccatggtctcaatg
aaaggccctggaattgggggttcctctggcaggggatctgctagtggtggttggggcggc
tctgcagctgataatgatgatggtagtgggagaggtcagacaaattcagactgggatgga
tcttctaggccagggtctggaacaggggggaaagattacagggatggtggttatactggt
agtggcggcaagcacaatagtgagcggggcggcggcggcaatagaggtcgctatggtagg
ggtagcagtggtcgtggtaatagggatggtggtagtgattggggcggcgttagtggtggt
ggttggggtgacgaaggtggcggcagtggtggtagttggggtggtggtcataccagcagt
agtggtaggggtggcaacgatcgtggtggtggcaacagtaggggtcgtggtggtaggagg
ggcaatggtgattggggaagtggtgatggcggcaatgacagcagtggcaagggcaatgtt
ggcgatgggggcaatgttggttggggtggtgatggaagtgggggttggggtggtggtgga
aacaataggggtcggggtggtaggagtaacggccgtggtggttggggcaacagtgatggt
ggggaagagggcaatgttggtgggggtggtaatgaaagtgggggttggggtggtggtgga
aacaataggggtcggggtggtaggagtaacggccgtggtggttggggcaacagtgatggt
ggggatgagggcaatgttggttggggtgggaatgaaagtgggggttggggtggtggtgga
aacaataggggtcggggtggtaggagtaatggtcgtggtggttggggtggcggcaatagt
gatggtggtgatgagggcaatgttgatgatggggccaatgttggctggggtggtgatgaa
agtggaggttggggtggtggtggaaacaataggggtcggggtggcaggggtcggggtggt
aggagtaacggccgtggtggttggggtggcggcaatagtgatggtgacggccgcattagc
aacggtggtgatgctggtggtagagatgatggtggttggggtggcagtgatagtggtgga
ggtcgtaggggtggtcggggtcgtggaggcggcagaggtcgcaacagtcgtggtggcagt
ggtggtggtagtggccattggggtagcagcggaggtggcagtggtggtggttggggcaat
gaaggcggtagtggttggggcagtggcagcgatggtaataatggtggggccagcggagct
agtggtggacaggtaagtggtggttgggctggtggcaataaggaaggcagtagtggcggt
ggtagtgttggtggttggggagatggtgctggtgggcatggtggtggagataatagtggc
gggaacagtggttggggaggctga
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integrated database retrieval system
