Magnolia sinica: 131227551
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Entry
131227551 CDS
T09699
Name
(RefSeq) vacuolar protein sorting-associated protein 54, chloroplastic isoform X1
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
msin
Magnolia sinica
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
msin01009
]
131227551
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
msin04131
]
131227551
Protein phosphatases and associated proteins [BR:
msin01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
131227551
Membrane trafficking [BR:
msin04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
131227551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
Syndetin_C
CENPU
Motif
Other DBs
NCBI-GeneID:
131227551
NCBI-ProteinID:
XP_058079335
LinkDB
All DBs
Position
15:complement(35881457..36025388)
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AA seq
1053 aa
AA seq
DB search
MDGDDALPSQPGRPSFMDPTVQISPSKINSFPSRISSSSSMRTSSNIDSPSYLHTHSLGI
NQSLASILNNPHVGKSGVYGSDASWSSWWSSATASSAEFAPLNVTKPLSPDVSRLDFQPY
LASILESYGRFEDIQHHCSEESRSDMEIKGQGEALVACLREVPSLYFKEDFALEDGATFR
VACPFASAPEENAALQEKLSHYLDVVELHLVKEISLRSDSFFEAQGHLQDLNVEIVDTCV
RIRDLKETMTLLDADLVELARQIQDLNATRSNLLALQQKLRLILYVNQALSALKLLVAAA
DCAGALDVTNDLQHLLDGDDLTGLHCFRHLRDELAMSIDSINSILSAEFMRASIHDAKDV
DSVILSKLKERASNVINGKDDEVKLDDEESSSFRDRLLPIIIGLLRTAKLPSVLRLYRDK
LIADMKMAIKTTVAELLPFLVARPVESDFTSGERTVDTDGGGLSLASKLRNLSSESFVQL
LSAIFKVVQAHLVRAAEVKKVIEWIMGNLDGCYAADSVAAAVALGAAAAAAAETAQENDG
QLGTPLPYSLQKNANKVLLLQGKPNEASTPSNMSKNFRADVLRENTEAVFAACDTAHGRW
AKLLGVRALLHPKLRLQEFLSIYNITQDFITATEKIGGRLGYSIRGTLQSQSKAFVDFQH
ESRMNKIKAVLDQETWAAVDVPDEFQAITDSFLSSEALVHGNGVDTYGVNLVSWNDGSLV
IDGVPSEEQPLRLNDSAMAADHPNQVMSEDGDNSENLIKALTSSVRKVDGNTNEQGRSTS
QALVFRGVSYHMVNCGLILLKMLSEYIDINRCLPALSSEVVHRVAEILKFFNTRACQLVL
GAGAMQVSGLKSITSKHLALASQVISFIYALMPEIKRVLFLKIPESRKALLLSEIERVAQ
DYKVHQDEIHTKLVQIMRERLLVHLRSLPQIVESWNKPDDNDHQPSQFARSLTKEVGYLH
RVLSRTLLEADVKAIFRQVVQLLHSQISEAFSNLEVNSPQAKNRLYRDIQHILGCIHTLP
SDNLSKDTVPNSGPLDEFLAQRFGAEVSRGMPM
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggatggtgacgacgctctgccttcccaaccaggaaggccctcgtttatggaccccacg
gtgcagatttccccatccaagatcaactccttcccatctcgcatcagttcctcctcttcc
atgagaacttcctccaacatcgattctccgtcctacctacacactcactctttaggcatc
aaccagagcctagcctcgatcctcaacaacccccatgtcggtaaatctggcgtctatggc
tccgatgcctcctggtccagctggtggtcctctgccaccgccagttccgcagaattcgct
cctttgaacgtcaccaagcctctatctcccgacgtgtcccgcttggatttccagccgtac
ctcgcttcgatcttggaatcctacggccgatttgaggacatacagcaccattgcagcgaa
gagagcaggagtgacatggagatcaagggacagggcgaagcccttgtcgcttgtctcagg
gaagtcccgtctctttatttcaaggaggacttcgccttggaagatggggccacgttccgg
gtcgcatgcccattcgcatctgcccccgaggagaacgcggccttgcaggagaagctctcc
cattacctggacgttgtagagctgcacttggtgaaggagatctcactccggtcggactct
ttcttcgaagcacaggggcacctccaggatttgaatgtcgagattgttgacacctgcgtt
cggatccgggacctgaaggagactatgacgctcctggatgcggacctggtggagttggcc
cgccagattcaggatctgaatgcgacgaggagcaatctattggcccttcagcagaaactg
aggctcatattatatgtcaaccaagcactttcggcgctgaagctgcttgttgcagcggca
gattgtgctggcgctctagatgtcaccaatgacttgcagcatttgctggatggcgatgat
cttactggtctccattgttttcgtcatcttcgggatgaattggcaatgtctatagattcc
ataaacagcattctttcagcagagttcatgcgtgcttctatacatgatgccaaagatgtg
gattctgtaattttgtcgaagttgaaagaaagggcttctaatgtcattaatgggaaagat
gacgaagttaagttagatgatgaagaaagttctagctttcgagatcgtcttctccccatt
atcattggattgcttagaacagcaaagcttccttctgtgctgcggttatatcgtgataaa
cttattgctgatatgaaaatggcaatcaagaccacagttgcagagttgcttccgtttttg
gttgcgcggcctgtggagtctgatttcacatctggagaaagaacagttgatacagatggt
ggaggtttatcacttgcgagcaagctacggaatctttcatctgaaagcttcgttcaactt
ctatctgctattttcaaagttgtccaggcacatttagtgcgggctgctgaagttaaaaaa
gtcattgagtggatcatgggcaaccttgatggttgctatgctgctgattctgttgcagca
gctgttgcacttggtgctgcagcagctgcggctgcagaaactgctcaagaaaatgatggt
caacttggtacacctctgccgtactctcttcagaagaatgccaacaaggttcttttgctt
cagggaaagccaaatgaggcttccacaccgtcaaatatgtcaaaaaatttccgtgctgat
gtattgcgggaaaacacagaagctgtttttgcggcttgtgatacggctcatggaagatgg
gccaagctccttggtgttcgtgctcttcttcatcctaagttgagactacaagaattttta
agcatctacaacattactcaagatttcataacagctacagagaagattggtggaaggttg
gggtatagcatacggggaactctgcagtcacaatccaaagcatttgttgattttcaacat
gagtctcgtatgaacaagattaaggcagttcttgatcaagaaacatgggctgcagtagat
gtcccagatgaatttcaggccatcactgactcatttctttcttcggaagctttggttcat
ggcaatggtgtagatacttatggtgttaatctagtctcatggaatgatggttcacttgtg
attgatggagtaccatctgaagaacagcctcttaggctgaatgattctgctatggctgca
gaccatccaaatcaagttatgtcagaggatggggacaattcagaaaatctaatcaaagct
ttaacttcttcagttcgaaaagttgatggaaataccaatgagcaggggagatctacctct
caagctcttgtgtttagaggtgtcagttatcacatggtaaactgtggcttaatactactg
aagatgttgtcagagtacattgatatcaatagatgtttgcccgcgctgtcttctgaagtc
gtgcaccgtgttgctgaaattttgaaatttttcaatacaagggcttgtcagcttgttctt
ggtgcgggtgccatgcaggtatcaggtttgaagtccataacatcgaagcacttggctttg
gctagtcaggtcattagttttatctatgctctcatgccagaaatcaagcgagttcttttc
ctgaaaatacctgaatctcgcaaggcgttgctactctctgagattgaaagagtagctcag
gattataaggtccaccaagatgagatacatacaaagctagttcagataatgagggaaaga
ttgttggtacatctacgtagtttgccccaaattgttgagagttggaataaaccagacgat
aatgatcatcagcctagtcagtttgctcgatcccttacaaaggaagttgggtatcttcat
cgtgtcttatctcgaactctacttgaggcagatgttaaagcgattttcaggcaagttgtt
caattactccattcacaaatttctgaagcattttcaaacttagaagtaaactctccccaa
gcaaagaatagactgtatcgggatattcaacacattcttggatgtattcacacattacct
tctgataatttgagtaaagacactgtcccgaactcaggcccacttgatgaattcttggcg
caaagatttggtgccgaagttagtcgagggatgccaatgtaa
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