Magnolia sinica: 131228057
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Entry
131228057 CDS
T09699
Name
(RefSeq) uncharacterized protein LOC131228057
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
msin
Magnolia sinica
Pathway
msin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131228057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131228057
03041 Spliceosome [BR:
msin03041
]
131228057
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
131228057
Spliceosome [BR:
msin03041
]
Complex B
Other components
Prp19-related factors
131228057
Complex C
131228057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_12
TPR_19
ARM_TT21_C
ARM_TT21
UTP6_C
PPR
CKAP2_C
Motif
Other DBs
NCBI-GeneID:
131228057
NCBI-ProteinID:
XP_058079869
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All DBs
Position
15:complement(9481902..9492471)
Genome browser
AA seq
928 aa
AA seq
DB search
MSTASSEPKSHPSISPDLYPTDADLPYEEEILRNPFSLKLWWRYLIARSTAPFAARSVLY
ERALRALPGSYKLWHAYLRERLESVRSLPVTHPNYSSLNNTFERALVTMHKMPRIWTMYL
QSLTHQRLLTRTRRTFDRALRALPVTQHDRVWGPYLTFVSQQGVPIETSLRVYRRYLKFD
PTHIEDFIEFLVNSKLWQEAAERLAGVLNDDGFYSIKNKTRHQLWLELCDLLTRHANEVS
GMNVDAIIRGGIRKFTDEVGRLWTSLADYYVRRGLYEKARDIFEEGLTTVVTVRDFSVIF
DCYTMFEESATNAKMETMDGSDDEEDGQDEDSSVDVRLDLSLSVEKLGKRILHGFWLNDD
NDLDLRLARLDHLMNRRPELVNSVLLRQNPHNVEQWHRRVKLFEGNPTRQILTFTEAVRT
VDPMKAVGKPHTLWVAFARLYENHKDVANARVIFEKAVQVGYKTVDNLASVWCEWAEMEL
RHKNFKGALELMRRATAEPSVEVKRRVAADGHEPVQMKLHRSLRVWTFYVDLEESLGTLE
STRVVYERILDLKIATPQIIINYALLLEENKYFEDAFKVYERGVKIFKYPHVKNIWVTYL
SKFVKRYGKTKLERARELFEHAIEMTPAEDVKPLYLQYAKLEEDYGLAKRAMKVYDQATK
AVPENEKMNMYEIYIARATEIFGVPKTREIYEQAIESGLPDKDAKTMCMKYAELEKSLGE
IDRARGIYVYASHFADPRSGSDFWNKWHEFEVQHGNEDTFREMLRTKRSILAGYSQTHII
LPEYLMQKDQKLNLEETVDTLKRAGVPEDEMAALERHLVPASTNPATNDSSRKVGFVSAG
VESQPSVIRTADGGRKVTANNEDIELPEGSDSDDESDDRVEIAQKDVPAAVFGELAKEVD
KDGDAAGGDNDGNSHLGALERIKRQRRQ
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggcatcatcagaaccaaaatcccatccgtccatctcccccgatctctacccc
accgatgcagacctcccctacgaggaggagatcctccgcaaccccttcagcctcaagctc
tggtggcgctacctaattgcccgctccacagccccttttgctgcacgctccgttctctat
gagagggctctccgcgctctccctggtagctacaagctatggcacgcctacctccgcgag
cgcctcgaatctgtccgttccctcccagttacccaccctaactactcttccctcaacaac
acgttcgagcgggccctcgtcaccatgcacaagatgccccgcatctggaccatgtatctc
caatccctgacccaccagcgccttctcacccgcacccgccgcaccttcgaccgggccctc
cgtgccctgcccgtcacccagcacgaccgcgtgtggggcccatacctcacgtttgtcagc
cagcagggtgttcctatcgagacctcgctccgcgtctaccgccggtacctgaaatttgac
cccacccacattgaggacttcattgagttccttgtcaattccaaactctggcaggaggct
gcagagcgcctggctggcgtcctcaatgatgatgggttctactcaatcaagaacaagacc
aggcaccagctctggctagagctctgtgatctcctgacccgccacgcaaatgaggtgtct
gggatgaacgtggatgcgatcatccgtggtgggatcaggaagttcactgatgaggtgggc
cgcctctggacgtcgctcgcagattattatgtacgacggggattgtatgagaaagcgcgg
gatatattcgaagagggcctgacaacagttgtcactgtgcgggacttcagcgtgattttt
gactgctatactatgttcgaagagagtgcaaccaatgccaagatggagacgatggatggc
agcgatgacgaggaggacggccaggatgaagatagctctgttgatgtacggttggatttg
agtctgtcggtcgagaagcttgggaagcggattttgcatggattttggctgaatgacgat
aatgatttggatttgaggttggcaaggctggatcatctcatgaatcgaaggcctgagctt
gtgaacagcgtattgcttcggcagaatccgcacaatgtggagcaatggcacaggagggtg
aaactgtttgagggcaatccaacacggcagattctgacatttacggaggctgtgaggacc
gtcgatcccatgaaggcagtggggaagccccatacattgtgggttgcatttgcacgattg
tacgagaaccacaaagatgtggccaatgcaagagttatttttgagaaggctgttcaggtt
ggttataagacagtggataatttggcgagtgtgtggtgcgagtgggcagagatggagctg
aggcataagaattttaaaggggcgttggagctgatgaggcgggccacggcagagccctcg
gtggaggtcaagcggagagttgctgctgatgggcatgaaccggtgcagatgaagctgcac
agatcattgagggtgtggaccttttatgtggatttggaggagagccttggaactctggaa
tctactcgtgtagtctatgagcggatacttgatttgaaaatagccactccacaaattata
attaactatgcattgcttctagaggagaataaatactttgaagatgcattcaaggtatat
gaaagaggtgtaaagatatttaaatatccccatgtcaagaatatttgggtcacatacctc
tccaaatttgttaaaaggtatggcaaaacaaagctagagcgggcaagagagttgttcgag
catgcaattgaaatgacacctgctgaagatgttaaaccactgtatctacaatatgcgaag
ctggaagaggattatgggcttgcaaagcgtgcaatgaaagtctacgatcaagctacaaag
gctgtccctgaaaatgaaaaaatgaacatgtatgaaatttacatagctcgtgcaactgaa
atttttggcgtcccaaaaacgagggaaatatacgagcaagccatcgaatctggtctcccg
gataaggatgcgaaaactatgtgtatgaagtacgctgagctagaaaagagcttgggagaa
attgatcgtgctcgtggtatatatgtatatgcatcacattttgcggatccacgttctggc
tctgatttctggaacaaatggcatgaattcgaggtgcaacatgggaatgaagacaccttc
cgagagatgcttcgtacaaagcgcagtatcttagctggctatagccagacacatatcatt
cttcctgaatatttgatgcaaaaggatcagaagctgaacctcgaggaaacagtagacaca
ttaaagcgtgctggtgttcccgaagatgaaatggctgctttagaacgccatttagtccct
gcttccactaacccggctactaacgacagcagcaggaaagtgggctttgtcagtgctgga
gtggagtcacagcctagcgtgatccgtactgctgatggtgggagaaaggtaactgcaaat
aatgaggatattgaattgcccgaaggcagtgattcagatgacgagtccgatgaccgagtt
gaaatcgcgcaaaaggatgttccagctgctgttttcggggagctggcaaaggaggtcgat
aaggatggggatgctgcgggtggagacaatgacggcaacagtcatttgggtgcccttgag
agaataaagaggcaaaggcggcaataa
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