Magnolia sinica: 131228998
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Entry
131228998 CDS
T09699
Name
(RefSeq) uncharacterized protein LOC131228998 isoform X1
KO
K06100
symplekin
Organism
msin
Magnolia sinica
Pathway
msin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131228998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msin03021
]
131228998
03019 Messenger RNA biogenesis [BR:
msin03019
]
131228998
Transcription machinery [BR:
msin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131228998
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
131228998
U7-dependent histone pre-mRNA processing factors
131228998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
131228998
NCBI-ProteinID:
XP_058080829
LinkDB
All DBs
Position
16:complement(65176457..65231749)
Genome browser
AA seq
1350 aa
AA seq
DB search
MAFASREQAISLLSAAKNHSDLAVKISSLKQVKDILLSVDPSLAADLFPNIAELQSSPES
LVRKWLVELMEELGLKAIEQSYILMPVLLALLKDDSPVVVRQTIVSGTNFFCRVLEEMAI
QFRQSGKVERWLEELWPWMVKFKDAVFGIGLEPGNAGSKLLAVKFLEICVLLFTSDANDS
EAPSREGKGRNFNVSWLVGGHPILDPSVLTLEANKGVGLLLDQLQSAKSLRGSLIVVIIN
CLAAIARKRPLHFSSIISALLGFDPNFETLKGGHAASIQYALRTAFLGFLRCTHPSIIES
RDRLLRALRAMNAGDAADQVIRQVDKMLKNTERAVRDSRFTKEDLPSTQIPVSVDLIRKK
SIAQDNEVPNSDDMPAKRIRFSPAISSAQPAHMSSDSAQDDIAANDISSKAPLLDNVLTP
VEQMITMIGALLAEGERGAESLEILISKIHPDLMADIVIANMKHLPKSPPPLSSRLGNLP
VNSQTSLSGTSTPVVPQAAATGSAQPSGFTSQVVSPLSSTTGISLSTSDASTTPNLPSDM
KRDPRRDPRRLDPRRAPEPVGVQPSSAKLEDTSDTQSGCDGSSSISRPISVPVATKVEHT
AVSLMPKSDIELSENSAAPIIDMSTSKENLEVPNEANEAVAALEVHTSSEPTLSPVRVAD
QDQVASTSSDVTLMDGVDTCMLESDQYSSAVSRASEEISHDLPLLPLYIELTNEEQQSLS
KLAVARIIEAHGKNQATGCSDACLVLLARLVAQQTLFIWQTDADDDIVAMLQKHIILDYQ
HKKGHELAMHVLYHLHAAMISESEEHTCSVAATVYEKFLLAVAKPLRDSLPASDKSFSRL
LGEVPLLPESVLKLLEELCYSEGFDKHEKDVRDGDRVTQGLGAVWSLILGRAPNRQACLN
IALKCAVHSQDEVRSKAIRLVANKLYPLSYLAENIEQFATNMLLSVVDQQVPDVEKTHAG
SNELSSEAYVGNQETSVSGSQNSEPGASESDSMKGVQPASQSAPTMFLSQAQRKMSLFFA
LCTKKPRLLQLVFDIYGRAPKAVKQAIHRHVPILVRTIGSSYSELLCIISDPPEGSENLL
MLVLQILAEETTPSADLIATVKHLYETKLKGAAILIPMLSSLSKDEVLPIFPRLVDLPLE
KFQSALDHILRGSAHTGPALTPAEVLVAIHDINPEKDGIALKKITDACTACFEQRTVFTQ
HVLVKALNLLVEQTPLPLLFMRTVIQAIDAFPSLVDFVMEILAKLVSKQIWKMPKLWVGF
LKCASQTKPHSFHVLLKLPPAQLESALNKYANLRGPLAAHANQPNIRTTLPRSTLVVLGL
VNESQTPRSYLPSVLHTSDTSSSVHGATLT
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgcttctcgcgagcaggcaatctctcttctatccgccgcgaagaaccatagc
gatttggctgtgaaaatctcctcccttaaacaagtcaaggatattctgctctccgtcgat
ccgtccctcgcagccgacctgttcccgaacatcgccgagctccagtcgtcacctgaaagc
cttgtgaggaaatggctcgttgagttgatggaagagctcggtttgaaggcaatagaacag
tcatatatattgatgcctgtattattggcacttctaaaagatgattcacctgtcgtagtt
aggcaaactattgttagtggcacaaatttcttttgccgcgtcctggaagagatggcaata
cagtttcgtcaatctggcaaagttgagagatggcttgaggaattgtggccatggatggtt
aagttcaaggatgctgtttttggcattggtttggagcccggtaatgccggatcaaagttg
ctggctgtgaaatttttggaaatttgtgttttactttttacatctgatgccaatgattct
gaagcaccatccagagaaggaaagggacggaattttaatgtctcatggttagttggaggc
catccaattttggatccatctgttctgacgttggaagcgaacaagggtgttggcctttta
ctggatcaattgcaatctgctaaatcgcttcgtggttctttgatagtagttattatcaac
tgtcttgcagccattgcgaggaaaaggcctctccactttagcagcattatttctgcgctt
cttggttttgatcctaattttgagactctaaagggaggtcatgctgcgagcatccagtat
gctttgaggactgcatttttgggattcttaaggtgtactcatccatccataatagagtca
cgtgacaggttgcttagggccctacgagcaatgaatgctggcgatgcagctgaccaagtt
attcggcaagttgataaaatgctgaaaaatactgagcgtgctgtgcgtgattcccggttt
accaaggaggacctgccctcaactcaaatacctgtttctgtggatctgattagaaagaaa
tccatagctcaggataatgaagttcctaattctgatgacatgcctgcgaagcggattcgg
tttagtcctgctatcagttcagctcagcctgctcacatgtcaagcgattctgcacaggat
gacattgcggcgaatgacatttcttctaaggcgccattgctggacaatgttctaacccct
gttgaacagatgattactatgattggtgctctgctggcagaaggtgaaaggggcgctgag
tcacttgaaattttaatatcaaaaattcatcccgacctgatggctgatatagtcatagcc
aatatgaaacatctacccaagagtcccccacccttatccagcaggcttggaaacttgcca
gtaaattcacagacaagtttgtccggtacctcaactccagtggtgccacaagctgctgca
acaggctctgcacaaccttcaggttttacatcacaagttgtctcacctttgtcttctaca
actggaatcagtctatcaacatctgatgcttcaacgacgcctaatcttccttctgacatg
aagcgtgatccacgaagggaccctcgtcgtcttgatccacggcgtgcaccggaacctgtt
ggagtacaaccatcatctgcaaaattggaggataccagtgatacacaatctgggtgtgat
ggttccagttccatcagtagacctatttcggttcctgtggcgacaaaggttgagcacacg
gcagtatctttgatgcccaaaagtgatatagagctttcagaaaattcagcagctcccatt
attgacatgtcaacctctaaagaaaatttagaggttccaaatgaagcgaatgaagcagtt
gcagctctggaggttcatacatcttctgaaccaaccctttctcctgttcgggttgctgac
caggaccaggtagcgtcaacatcatcggatgttacattgatggatggtgttgatacttgt
atgctggagtctgatcagtattcttcagctgtctcaagagcatctgaagagatctctcac
gatctgccattgcttccgctttacattgagttaacgaatgaagaacaacaatctttgagc
aaattagcagttgcccgaattattgaagctcatgggaaaaaccaagctacaggctgtagt
gatgcatgcctggtgttacttgctcggttggttgcacagcagactttatttatctggcag
actgatgctgatgatgacattgtagcgatgctgcaaaaacatattattttggattaccag
cacaagaagggacatgagcttgcaatgcatgtcttataccacttgcatgctgccatgatc
tctgaatcagaagaacatacttgctcagttgctgccactgtttatgaaaagtttctccta
gctgtggcaaagcctttgcgggactctttaccagcctcagataagtcatttagtaggctt
cttggggaagttccacttttgcccgaatctgttctgaaacttcttgaggaactttgttac
tctgagggctttgataagcatgagaaagatgtacgtgatggcgatcgtgtcactcagggg
cttggtgctgtatggagcctgattttggggcgtgcacccaatcggcaagcctgcttgaat
atagctttgaagtgtgctgttcattcacaagatgaagttcgatccaaggctattcgactg
gttgcaaacaaactctatccgctttcttatttggcggaaaatattgaacagtttgcaaca
aatatgttgttgtcagttgttgatcagcaagttcctgatgtagagaaaacacatgcgggc
tctaatgagctaagttcagaagcatatgttggaaatcaggaaacatctgttagtggttca
caaaattcagagcctggagcttctgaaagtgactctatgaagggtgttcaaccggcttcg
cagagtgctccaactatgtttttgtctcaagctcaacgcaaaatgtcccttttctttgcc
ttatgtaccaagaaacctagacttcttcaacttgtttttgatatttatggacgggctcct
aaggccgtcaagcaggctatccatcggcatgtacctattcttgtgaggaccatagggtca
tcatattctgaattgttatgcataatttctgatccaccggaaggaagtgaaaatctttta
atgctggtgctgcaaattttggcggaagagacaacgccttcagctgatctgattgccact
gttaaacatttatatgagaccaaactaaagggtgcagctattcttattccaatgttatct
tctctgtccaaagatgaggttttgcctatttttcctcggcttgttgatcttccattagaa
aagttccagtcagcacttgatcacattctgcggggttcagctcatacaggtccagcatta
acacctgcagaagtgttggttgctattcatgacattaatcccgagaaggatgggattgca
cttaagaagataacggatgcttgcacagcttgttttgagcaacgcacagtttttactcag
cacgtcttagtaaaagctttgaacctgctggttgaacaaactcctctacctttgcttttc
atgagaacagttattcaagctattgatgcttttccttctctggttgattttgttatggaa
atacttgccaaacttgtgagtaagcagatatggaagatgccaaaattgtgggtggggttc
ttgaaatgtgcttctcagacaaagcctcactcatttcatgttctgttaaagttacctcct
gcgcaactagagagtgctctgaataaatacgccaacctcagaggtcctcttgccgcccat
gctaaccagcctaacataagaactacgttgccaagatcaacactggtggtccttggcctc
gtaaatgaatcacagacaccgcgatcatatttgcctagtgtgttgcatacttcagacaca
agttcttctgttcatggtgcgaccctaacgtga
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