Magnolia sinica: 131229004
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Entry
131229004 CDS
T09699
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
msin
Magnolia sinica
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
msin03036
]
131229004
Chromosome and associated proteins [BR:
msin03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
131229004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
Cnd1
PHD_2
TPR_DNAAF5
Motif
Other DBs
NCBI-GeneID:
131229004
NCBI-ProteinID:
XP_058080839
LinkDB
All DBs
Position
16:35226691..35330053
Genome browser
AA seq
1771 aa
AA seq
DB search
MAGSSDEICRGLGHERSCRLSNTTHTEVAPCLPLPSLPVFCGAPDRELRLFDEPSSSARS
LDRPEIVAQASRIADLLRDTDISYLNLRGGVGPTPYICSEPLNLYTKVLQCNSDAFGYFI
PGLVKEENCHDWVSEKNSFQQNVTIISHTQREYEEVIDHSNGNLTNETPSSVSSRKPKIK
KKGSNDASFPKGPDSPELQDGIVGGFCEMLEDFCGRAETTNDDLDEGEGPSLPLADIKLL
VNEIMSIRGKKILHLVPVDALVRLLNVLDRQIHQGQGLSIDENENSDSDIVSLVICALES
THASLAIMTHHDMPKQLYKEEIIERILDFSRHQIMESMLACDPSYRALHKPRENDIFDGD
EDEEFDADVGPVGKRRRNFRSVKMKKSTGNKVTAAVYAIVQKLCTILGFMKDLLSIERLS
DSCILQLVKTSFATFLADNIQLLQLKAINLICGVFASYEQHRNFLIDETFQLLWKLPFSK
RAIRSYHLPDEEQRQIQMITALLIQLVQCSANLPKALGQTLDGNSILEVSVDANYPIKCH
DAATEACCIFWTGVLQRFTAVKSQDVSELKVIMENLVMDLLTTLNLPEYPASALILEVLC
VLLLQNAGLKSKDISARCMGIDLLGTVAARLKRDAVLRSSDKFWILLEVVGEHSDVSTNP
RDVCSICLDGRGGKNLIVCQGCERCFHADCTGATGQEVLPRGWSCQLCLCKKQLTVLQSF
CKSHCNVSASKNQTVTQSASEASDGITRLEVVQQMLLNYLQEAGSTDDGHLFARWFYLCL
WYKDDPKAQEKFTYYIARLKSKAIVRDFGTISSLLTRESAKRISLALGQNNSFSRGFDKI
LYVLLASLRESSPVLRAKALRAVSVIVEADPEFLCEKNVQSAVEGRFCDSAISVREAALE
LVGRHIASHPDVGLKYFEKVAERIKDTGVSVRKRAIKIIRDMCTSNANFSESTNACIEIV
SRVNDEETSIQDLVCKTFYEFWFEEPSGAQTQFAGDGSSVPLEVAKKTEQVVEVLRRMPN
HQLLVTVIRRNLTLDFFPQSVKAVGINAVSLASVRRRCELMCKCLLERILQVDETINEEV
EVRALPYVLALHAFCIVDPTLCAPASDPSQFVVTLQPYLKSQVDNRVVAQLLESIIFIID
VVLPLLRKPPTSVIEELEQDLKHMIVRHSFLTVVHACIRCLCSLSKIAGKGATLVEYLIQ
VFFKRLESLGADNKQQVGRSLFCLGLLVRYGNELMVTCDNHNLTALKSVSLLKNYLREED
FSIKVRSLQALGFVLIARPEYMLEKDIGKILEATLSSSSDARLKMQSLQNLYEYLLDTES
QMETEHASNTVTHYPEETGQRVPVAAGAGDTNICGGIIQLYWSNILGRCLDANDQVRQSA
LKIVEVVLRQGLVHPITAVPYLIALETDPQEVNSKLAHHLLMNMNEKYPAFFESRLGDGL
QMSFGFIQSLASFSVESSNQNKVPGNVKGKSDSSIFAHSRLGISRIYRLIRGNRVSRNKF
MSSVVRKFDSGSSNQSFTPFLVYCTEILASLPFTLPDEPLYLIYTINRIIQVRAGALESE
MKALCSRSLQGDATKISQENGVVQDMGALSICDSNHTEVAMMHAMNSIDSCGISREDLQK
FQDACHAAIALQLLLKLKRHLKIVYNLNDARCQAFSPNEPLKSGETLSRQSIPFNINGTP
ISLPTTYKEMTEKYQDFKASLKEDTIDYSAYTANIKRKRPPPRSSRGGKSIRETGDDEED
DDDDGDWTSGSRRLSGGGQKSNGGRRTRQRL
NT seq
5316 nt
NT seq
+upstream
nt +downstream
nt
atggcgggttccagtgatgagatttgtcgaggtctcggccatgagcggtcttgccggcta
tcaaacacgacgcatacggaggtcgctccatgcctccctctaccatcgctcccagttttc
tgcggtgctcctgatcgggagcttcggctgtttgatgagccaagcagcagtgcccggtca
ctggaccggccggagattgttgcacaggccagtaggattgcggatcttcttagagacacc
gacatttcttacctgaatcttaggggtggagtaggccctactccgtatatctgttcagag
cctttaaacctttataccaaagttctacaatgcaattccgacgcattcggatacttcatt
ccaggtcttgtcaaagaggagaactgtcatgattgggtatctgaaaagaattcatttcag
caaaatgtaaccattattagccacacgcaaagagagtatgaagaagttattgatcattcg
aatgggaaccttactaacgaaacacctagttcagtttcttcaagaaaaccaaaaataaag
aagaaaggaagcaatgatgcttctttcccaaaggggccagattcccctgagctacaagat
ggcattgtaggaggattttgtgagatgttggaggatttctgtgggagagcagaaaccact
aatgatgatctggacgaaggggagggtccatctctacctctagctgatattaaattgctt
gtaaatgaaataatgtccatccgtggaaagaaaatcctacacttggttcctgtagatgct
cttgtaagacttttaaatgttctagatcgccagattcatcaaggacaaggcttgtccatt
gatgaaaatgaaaattctgattcagacattgtgtcattggttatttgcgctttggagtcc
actcatgcatctctagcaattatgactcaccatgacatgccaaagcagctctataaagaa
gaaatcattgaaagaattctagacttctccaggcatcaaattatggaaagcatgctagct
tgtgatccatcatatcgtgctctgcataaaccaagggaaaatgacatatttgacggtgac
gaggatgaagagtttgatgctgatgttggtccagtgggcaagaggcgtcgtaattttagg
agtgttaaaatgaagaagtcaacagggaacaaggttactgcagctgtctatgccattgtt
cagaaactttgcactattcttggttttatgaaggatctactgtcaatagagcgtctatca
gatagttgcatcctgcagttagtgaagacaagctttgcgacgtttctggcagataacatt
caactcttacagttaaaagctatcaatttgatctgtggggtgtttgcttcatatgaacag
cataggaattttttgattgatgaaacatttcagctcctttggaagttaccattttcaaag
cgtgctattagatcttaccatcttcctgatgaagaacagaggcagattcagatgataact
gccttgctgattcagctggttcaatgtagcgcaaatcttcctaaagcattaggacaaaca
ttagatggtaattccatcctagaggtctcagttgatgccaactacccaattaaatgccac
gatgctgctactgaggcatgttgtatcttctggacgggtgttcttcagcgatttacagct
gtgaaatctcaagatgtgtctgagttaaaagtgataatggagaaccttgttatggatttg
ttgacaacattgaacttacctgagtatcctgcttctgctcttatacttgaggttctttgc
gtcttactgctccagaatgctggtttgaaatctaaagacatttctgctcgttgcatgggt
attgaccttcttggaacagttgctgcaaggttgaaacgtgatgctgtccttcgcagcagt
gataaattttggattttactggaggtggttggtgaacattctgatgtgtccactaatcct
agagatgtatgctctatttgtcttgatgggagaggtggaaaaaatttgatcgtttgtcaa
ggttgtgagagatgctttcatgcagattgcacaggagctacaggacaagaagttctgccc
cgtggttggtcttgtcaactttgtctctgtaagaagcaacttactgttctacaatcattt
tgcaagtcacactgcaacgtttctgcatcaaagaatcagactgtaacacagagtgcatct
gaagcatcagatgggattaccagattggaagttgttcaacaaatgcttttgaattatctg
caggaagctggttctacagatgatgggcacctgtttgctcgctggttttatctgtgccta
tggtacaaagatgatcccaaagctcaagagaaattcacttactatattgctagactgaaa
tcaaaagcaattgtccgggattttgggactatttcgtcattactgacgagagaatcagct
aaaagaatatccttagcattggggcaaaacaattccttttcgaggggatttgataaaatt
ctctatgtgcttctggccagtttaagagagagttctcctgtactaagggccaaagcttta
cgagcagttagtgtgatagttgaagccgatcctgagtttttatgtgaaaaaaatgtccaa
agtgctgttgagggaaggttttgtgactctgcaatctctgtaagagaagctgctttggaa
cttgttggtaggcatattgcctcgcatcctgatgttggtttgaagtattttgaaaaggtt
gctgaacgaataaaggatactggagtgagtgttcgcaaacgagctatcaaaattatccgg
gacatgtgcacttcaaatgctaacttttcggaatccacgaatgcttgcattgagatcgtt
tctcgtgtcaacgatgaagaaactagcatacaggaccttgtctgcaaaacgttttatgaa
ttctggtttgaggagccttctggtgcccagactcagtttgctggagatggtagttctgtg
cctttagaggtggcaaagaagacggagcaggttgttgaggtgttgagaaggatgcctaac
catcaacttctcgtcactgtcataaggcgcaacttgacacttgatttttttccacaatca
gtcaaagcagttgggatcaatgcagtatcactggcatctgtacgcaggcgctgtgaacta
atgtgcaaatgcttattggaaagaatattgcaggtagatgaaacaattaatgaagaagtg
gaggtgcgggcacttccctacgtgctggctttgcatgcattctgtattgtggatccaacc
ctttgtgctcctgcatctgatccatcacagtttgtcgtgactctccagccataccttaaa
agccaggtggacaatagagtggtggcacaattgcttgaaagtataatctttataattgat
gttgttctgccattgcttcgaaagcctccaacaagcgttattgaagaacttgaacaagac
ttgaaacatatgattgttcggcattctttcctaactgtcgtgcatgcttgcatcaggtgc
ctttgttcactaagcaaaatcgctggaaagggggcgacccttgtcgagtatctcattcag
gttttcttcaaacgtttggagagccttggagctgataacaaacagcaagtgggacggtcc
cttttttgtcttggacttcttgtccgctatggcaacgagttgatggtcacctgtgataac
cacaatttaactgctcttaagagtgtctccttgcttaaaaactatcttcgtgaggaagat
tttagcataaaggtccgatctttgcaggcactcgggtttgttttaatagcgaggcctgag
tatatgttggaaaaggatataggaaaaatattagaggccactctgtcttctagttctgat
gctcggcttaagatgcaatcactgcaaaacctttacgaatatcttcttgatacggaaagt
caaatggaaactgagcatgccagtaatactgtaacccattatcctgaagaaactggacag
agagtacctgttgctgccggtgcaggtgacactaacatctgtggaggaataattcaattg
tattggagtaacatcttaggaagatgcctagatgcaaatgaccaagttcgccagtctgcc
cttaagattgtagaagttgtactgcgtcaaggtctggttcacccaattacagcagttcca
taccttatagctcttgaaactgatccgcaagaggtcaattcaaagttggcgcatcacttg
ctaatgaacatgaatgagaagtatcctgctttctttgaaagccgattgggcgatggcctt
cagatgtcatttggtttcatccaatcccttgctagcttttctgttgaatcatccaaccaa
aataaggtacctggaaatgtgaaagggaaatctgatagcagcatttttgctcattcaagg
cttgggatttctcgaatctacaggcttattcggggaaatcgtgtctcaagaaacaaattt
atgtcgtctgtcgtacgcaaatttgattcaggaagctcgaaccaatcattcactcccttc
cttgtatactgcactgaaattcttgcttcccttccattcacgttacccgatgagcctctt
tacttgatctacacaataaatcgaatcatacaagttagagctggtgcacttgaatcagaa
atgaaagccttgtgttcccgctccttgcaaggggatgcgacaaaaatatctcaagaaaat
ggtgtggttcaggacatgggagcactcagcatctgtgatagcaatcacacagaggttgca
atgatgcatgccatgaattcaattgattcttgtggcatttccagagaagatctgcaaaaa
tttcaggatgcttgtcatgctgcaatagctttgcaacttcttttgaagctaaagagacac
ttaaaaattgtctacaacctaaatgatgcacgctgtcaggctttttctccaaacgagcct
ctaaagtcaggagagactctctccaggcaaagcattccctttaacatcaacggaactccg
atcagtttgccaaccacatacaaagagatgactgaaaaataccaggacttcaaggcatct
ctgaaggaagacaccatagattactctgcctatacggctaatatcaaaaggaagcgtccg
cctcccagaagttcaagaggtgggaaatccatccgtgaaacaggtgatgatgaagaggat
gacgacgatgatggagattggaccagtgggtctcggaggcttagtggtggtggccagaaa
agcaatggtggcaggaggacccggcaacggttatag
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integrated database retrieval system
