Magnolia sinica: 131229157
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Entry
131229157 CDS
T09699
Name
(RefSeq) probable ubiquitin conjugation factor E4 isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
msin
Magnolia sinica
Pathway
msin04120
Ubiquitin mediated proteolysis
msin04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
131229157
04120 Ubiquitin mediated proteolysis
131229157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msin04121
]
131229157
Enzymes [BR:
msin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
131229157
Ubiquitin system [BR:
msin04121
]
Ubiquitin ligases (E3)
U-box type E3
131229157
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
131229157
NCBI-ProteinID:
XP_058081021
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All DBs
Position
16:complement(19523550..19566786)
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AA seq
1074 aa
AA seq
DB search
MQKALSQPPTGSAMLAQKPQKTPAEIEDIILRKIFLISLTGSASSDPKVVYLELTAAEIL
SEGRPLLLCRDLLERVLIDRLSQNFPGADPPFHYLVGCYRRAYEEGKKVGSMKDKGLRSE
MESVIRQAKKLAVSYCRIHLGIPDTFASGDGVKDRKLLLPLIFSEVSSAVDGFGGSSSGA
GGLSCPPGFLEEFFRDSDSDSLEPILSDLYDGLRHSVLNVSALGNFQQPLRALMMLVTFP
NCAKCLVANRWWIPKGAYVNGRVMEMTSILGPFFHVSALPDPGIFKSQPDVGQQCFSEAS
TRRPADLMSSLTTIRTVMNNLYDGLREVLLALLKNTDTRESVLEYLAELIKRNASRSHIQ
VDPLSCASSGMFFNFSAVMLQLCEPFLDANLTKRDKIDPKYVFYNSRLDLRGLTALHASS
EEVAAWIGKDNCEKIDGLSHRSDEENRLLQSQEATSSGNSTSSVLSKAKPLSSCGVKNKY
PFICECFFMTARVLNLGLLKAFSDFKHLDQDLSRCKETLSTLKAMQGQGASPQLELDIAR
LEKEIELYSQEKLCYEAQMMDGALLQRALSFYRLMVVWLVGLVGGFKMPLPSQCPMEFAC
MPEHFVEDVMELLIFACRFPKALDGFMLEEFLNFIIMFMASPSYVRNPYLRAKMVEVLNY
WMQISRSSGSLSSGIPSSISSAILALFEGNQLALEYLVRNLLNLYVDIEFTGSHTQFYDK
FNIRHNIAELLEYLWNVPSHCNAWRQIAREEEKGVYLNFLNFLINDSIYLLDESLNKIPE
VKGIEAEMANTAEWERRPAQERQDRTRLFHSLENIIRIDMKLANEDIGMLVFTSEQISAP
FLLPEMVDRVASMLNYFLLQLAGPQRNTLTLKDPKKYDTYGFQPKELLKKIVRIYVHVAR
GDKENVFPSAISKDGRSYNEQLFADATDVLRKIGEDIRVIQEFVELGAKAKMAASDAMDI
EAVLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDNSDPFNRSHLTQDML
IPDVELKARIEEFVRAQELKKQSQGLALDMQSSEVDFQNTKGKITSADWNPMEQ
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaagccctctctcagcctccgacggggtcggcgatgctggcccagaagccccag
aaaacccctgctgagatcgaggacataatcctccgcaagatcttcttgatttccctcacc
ggctctgcctcttccgatccgaaggtcgtctacctcgagctgaccgctgctgaaattctc
agcgaaggccgcccgcttctcctctgccgtgatttgctggagagggttctgattgaccgg
ctgtcccaaaatttcccaggtgctgacccgccttttcattacctggtcggatgctaccgg
cgtgcctatgaagaggggaagaaagtcggctcgatgaaagacaagggactccggtcggag
atggaatccgtcatccggcaggcaaagaagctggcagtttcctactgccgcatccatttg
ggaattcccgacacgtttgcgagtggtgatggtgtgaaggacaggaagcttttgctgcct
ttgattttctcagaggtttcgagcgcagtggatgggtttggggggagtagttcaggtgct
ggtggattgagttgcccacctggttttctagaggaattcttcagggactcggattcagat
agcttggagcctatcttgagtgatttgtatgacggtctgaggcatagcgttctgaatgtt
tctgctctcggaaacttccagcagccattgagagcgctgatgatgttggtcacatttcca
aactgtgcaaagtgtttggtagctaaccggtggtggattccaaagggggcctatgtgaat
ggacgtgtgatggagatgacaagcattttggggcccttttttcacgtcagtgcacttcct
gatcctggtatttttaaaagccagccggatgttggccaacagtgcttttcagaagcatca
actcgtcgaccggctgatttgatgtcttctttgacaacaattaggactgtgatgaacaac
ttatatgatggccttagggaagtcctgcttgcacttctgaaaaatacagatacccgagaa
agtgttcttgagtatcttgcagagttgatcaagaggaatgcatcgaggtctcatatacag
gtggatccactatcttgtgcaagttctggcatgtttttcaattttagtgcagtcatgctt
cagctgtgtgagccctttctagatgcaaatctaacaaaaagagacaaaattgacccaaag
tatgtgttttataatagccggttggatttaagagggttgacagctctccatgcatcatcc
gaggaggttgcagcatggattggcaaagataattgtgagaaaattgatggacttagtcat
agaagtgatgaagagaatcgattattacagtctcaagaagctacaagctctggcaatagt
acaagttctgttctttctaaagccaagccactttctagttgtggtgtaaagaataagtac
ccatttatttgtgaatgtttcttcatgactgcacgggtgctcaatttggggctcctgaaa
gcattttcagacttcaagcatctagatcaggacttgtctaggtgcaaggaaacattgtca
acccttaaagccatgcaggggcagggagcctctccacaactagagctggacatagctcgc
cttgaaaaggaaattgagttatattcacaggagaagctgtgttatgaagctcaaatgatg
gatggggcacttcttcagcgtgcactatctttctacaggttaatggtggtttggttggtt
ggtttggttggaggatttaaaatgcctctgccatcacagtgcccaatggaatttgcatgt
atgccagaacactttgtcgaagacgtcatggaattgcttatttttgcttgtcgattccca
aaagctttggatggatttatgctggaagaatttttgaactttattatcatgttcatggca
agtccgtcatatgtcagaaacccctacttgagggccaagatggtggaagtcctgaattac
tggatgcaaattagtcgttcatctggtagtctttcatctggcataccttccagcatttca
tctgccatacttgccctttttgaagggaaccaactagctcttgagtatttagtccggaat
cttctgaatctttatgtggatattgaatttaccggttctcatacacagttctatgacaag
ttcaatattcgccataatatcgctgaacttctggagtacctatggaatgtgcctagccat
tgcaatgcatggagacagattgcaagagaagaggagaagggagtgtatttgaactttctg
aatttcttgatcaatgatagcatctatcttcttgatgaaagtcttaataaaatccctgaa
gtcaaagggatagaagccgagatggctaatactgcagagtgggagcgaagaccagctcaa
gagaggcaggacaggacacgcttgtttcattctttggagaatatcattcgaattgatatg
aaattggcaaatgaagatatcgggatgttagtatttacgtcggaacagatttctgctccg
ttccttcttccagagatggttgatagagtggcaagcatgctcaattacttcttgttgcaa
cttgcgggccctcaacgtaatactcttactctgaaagacccaaagaagtatgacacatac
gggttccaaccaaaggaactgctaaagaaaattgtcagaatatatgttcatgttgcaaga
ggagacaaggaaaatgtattcccaagtgccatctcgaaggatgggcgttcatacaacgaa
cagttgtttgctgatgcaacagatgttctgcggaaaataggtgaagatataagggtgatt
caggagtttgttgagcttggtgcaaaagcaaaaatggcagcttctgatgcaatggacatt
gaagctgtccttggagaaataccggatgaatttcttgaccccattcagtatactttgatg
aaggatcccgtcatcttaccttcatcgagaatcacagttgataggccagtaatccagaga
catctgctcagtgataatagtgatccattcaaccgatcacaccttactcaagacatgctt
attccggatgttgaactgaaggcaaggattgaagaatttgtaagagcacaggagttgaag
aagcaaagccaagggctagcactggacatgcaaagttctgaggtagatttccaaaacaca
aaaggtaaaattacttcagctgattggaacccaatggaacaatag
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