Magnolia sinica: 131229483
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Entry
131229483 CDS
T09699
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
msin
Magnolia sinica
Pathway
msin03013
Nucleocytoplasmic transport
msin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131229483
03015 mRNA surveillance pathway
131229483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131229483
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
131229483
mRNA cycle factors
P-body specific factors
131229483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
131229483
NCBI-ProteinID:
XP_058081430
LinkDB
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Position
16:2533803..2559556
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AA seq
1192 aa
AA seq
DB search
MEHPEYECRVVGEHGKDDEENVARLEEFKKSIDAKIALRRSNLNPERPDSGFLRTLDSSI
KRNTAVIKKLKQINEEQREGMMEELKSVNLSKFVSEAVTAICDAKLRTSDIQAAVQICSL
LHQRYKDFAPSLIQGLLKVFFPGKSGDDLDADRSLKAMKKRSTLKLLVELYFVGVIEDAS
IFVNIIKDLTSMEHLKDRDTTQMNLSLLASFARQGRIFLGLPQSGQEIHEEFFRGLNITA
DQKKLFRKAIYSYYDASADLLQSEHTSLRQMEHENAKVLNAKGELSDENVNAYEKLRKSF
DHLFRGVSSLAEALEMQPPVMPEDGHTRVTTGEDSSFPASGKESSALEPIWDDEDTRAFY
ECLPDLRAFVPAVLLGEVEPKLNEQSAKTQEQQTFSGPKESVPEPDQSQMVVQDNVEASV
DSEFSQDGKADEKGKDKEDKEKEKISDSDKEKAKEKDAERKGEAEKEKLKSLDGTNLDGL
LQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTC
MKDVSSMLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPAGLVFSCLKACL
DDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDSRHSTLVENAY
YLCKPPERSARVCKVRPPLHQYIRKLLFTDLDKSSIEHVLRQLRKLPWSECEAYILKCFM
KVHRGKYSQVHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQKRIAHMRF
LGELYNYEHIESSVIFETLYLILVFGHGTPEQDTLDPPEDCFRIRMIITLLQTCGHYFDR
GSSKRKLDRFLIYFQRYVLSKGSIPLDIEFDIQDLFADLRPNMTRYSSIEEVNAALVELE
EHERTASTEKINSEKNMDAESHKHSGQTPITHRANGQGSANGIEENGVHEDVDSESDSGS
GSMNSEGHEDDGEYDDKSDNHDDGCDSEDEDGGGPIASDEDEDVQVRQKVVEVDPQEEAD
FDRELRALMQESLDSRKLELRGRPALNMMIPMNVFEGSKDHHGRVAEGESGDETLDEEGS
GGNKVRVRVLVKRGNKQQTKQMYIPRDCSLVQSTKQKEAAELEEKQNIKRLILEYNDREE
EEFNGSGTQPMNWMQAGTGRPAGRGGTWDGSGRGGGMRQRHHSSGGLYGRRK
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggaacatccagaatatgagtgtcgtgtggttggagagcatggcaaagatgatgaggaa
aatgttgctcgtctcgaggagttcaaaaagtcaattgatgcaaagattgctttacgtcga
agtaatctgaatcctgaaaggcctgattcaggttttctcaggacattggattcaagcatt
aagcgcaatactgcggttattaaaaagctcaaacagataaatgaagagcagcgagaaggg
atgatggaagagttaaaaagtgtcaacctaagcaaatttgttagtgaagctgtgacagcc
atatgtgatgccaagctcaggacttcagatatacaagcagctgttcagatatgctctttg
cttcatcaaaggtacaaggacttcgcaccaagcctaattcagggactcttgaaagtcttc
tttcctgggaaatccggagatgacctggatgcagataggagcttgaaggcaatgaagaag
cgcagcacgctgaagctgctcgtggaactctattttgttggtgttatagaggatgctagt
attttcgttaacattattaaggatcttactagcatggagcatttaaaagaccgggataca
acccagatgaatttatctcttttggccagttttgctcgacaaggaagaatattcttagga
ctccctcagtcaggacaagaaattcatgaagagttttttaggggccttaacatcactgca
gatcaaaagaaactattcaggaaggcaatttactcctattatgatgcctctgctgatctt
cttcagtctgaacatacttcactgcggcagatggagcatgaaaacgcaaaggtcttgaat
gctaaaggagaactcagtgatgaaaatgtgaatgcatatgaaaagctaaggaagtcgttt
gaccacttattccgtggtgtctcttctttagccgaagcacttgaaatgcaacctcctgta
atgccggaagatggtcacactagggttacgactggagaagattcatcatttcctgcttct
ggaaaagaatcttctgctcttgaacctatatgggatgatgaagatacaagggccttttat
gaatgtttacctgatctcagagcttttgttccagctgtcttactgggagaagttgaacca
aagctgaatgagcaatctgcgaagacacaagagcaacaaactttttccggtcctaaggaa
tcggtgccagagccagaccagagtcaaatggtggtacaagacaatgtagaggcctctgtc
gattctgaattttcacaggatggaaaagcagatgagaaaggtaaggacaaagaggataaa
gaaaaagaaaagattagcgactctgacaaggagaaagcaaaggaaaaagatgctgaaaga
aaaggagaagctgagaaggagaagctgaaaagtcttgatggaacgaatttggatggtctg
ttgcagaggcttcctggctgcgtgagccgggaccttattgatcagttgactgttgaattt
tgttacttgaattcaaaatcaaacaggaaaaaacttgtacgggctttgttcaatgtaccc
agaacttctttggagttactaccatactattctcgtatggtggcaactctttcgacatgc
atgaaggatgtctcctctatgcttttgcagatgttggaggaggagttcaattttttgata
aataaaaaggatcaaatgaacattgaaacaaagatcaggaacataaggtttattggagaa
ctttgcaagttcagaattgcaccagcaggtcttgtctttagttgtttgaaggcttgttta
gatgattttactcatcacaacatagatgttgcttgcaaccttcttgagacatgtggacgt
tttctctatcggtcacctgaaactacaatacggatggcaaacatgttagagatattgatg
cgactgaaaaatgtcaaaaatctggattcacgtcatagtacccttgtggaaaatgcttat
tacttgtgcaaaccaccagaacgatctgctcgagtttgtaaagtccgcccaccattgcat
cagtatatccgaaagttgcttttcacagacctggataagtcctccattgagcatgttctg
cggcaactacgtaaattgccttggagtgaatgcgaggcgtacattttgaagtgctttatg
aaggttcacaggggaaagtacagtcaagttcatctgattgcttcacttactgctggcctg
agtcgctatcatgatgaatttgcagtagcagttgttgatgaggttctggaagagattagg
ctggggttggagttgaacgactatggtatgcagcaaaaacggatagcacatatgcgtttc
ttaggagagctatacaactatgaacatatcgaatcatccgtcatatttgagacactctat
ttgattcttgtttttggccatggcactccagagcaagatactctggacccacctgaagat
tgtttccgcataaggatgattataacacttctccagacatgcggccactattttgaccga
ggttcttcgaaaaggaagctcgacaggtttttgatatattttcaaagatacgttctcagc
aaaggttcaataccgctagacatcgagtttgacattcaggatctgtttgcggatttacgc
ccgaatatgacaaggtactcgtccattgaggaagttaatgcagctctggtggaattagaa
gaacacgagcgcacagcctcaacggagaagatcaacagtgagaagaacatggatgccgaa
tcccacaaacattctggccaaacacccattacccacagagcaaatggacagggatcagca
aatggaatcgaagaaaatggagtgcatgaagatgtagacagcgagagtgattccggtagc
ggcagcatgaattcagaggggcatgaagatgatggagagtatgatgacaaatcagataac
catgatgacggatgcgatagtgaggatgaggatggtggtgggcccatcgcttctgatgag
gatgaagatgtccaagtcaggcagaaggtggttgaagtagaccctcaggaagaagcagac
ttcgacagggagctgagggctctaatgcaggagagcttggattcacgcaagctggagctg
cggggccgaccagccctgaacatgatgataccaatgaacgtattcgaggggtccaaagac
catcatgggcgggttgctgagggggagagtggagatgagacgctggatgaggagggcagc
ggtgggaacaaggttcgcgtgagggtgctggtgaagagaggcaacaagcagcaaacaaag
cagatgtacatcccccgcgactgctcacttgtgcagagcacaaagcagaaagaggctgca
gagctggaagagaagcagaacatcaagaggctcatcttggaatataacgacagggaggaa
gaggagttcaatggttctgggacacagcctatgaattggatgcaggcagggacaggcagg
ccagcaggccgtggcggcacatgggacggatccggcaggggtggcggcatgcggcagcgg
caccactcatctggcggactgtatggcagacgaaagtag
DBGET
integrated database retrieval system
