Magnolia sinica: 131229752
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Entry
131229752 CDS
T09699
Name
(RefSeq) SWI/SNF complex subunit SWI3D isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
msin
Magnolia sinica
Pathway
msin03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
131229752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msin03021
]
131229752
03036 Chromosome and associated proteins [BR:
msin03036
]
131229752
Transcription machinery [BR:
msin03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
131229752
Chromosome and associated proteins [BR:
msin03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
131229752
PBAF complex
131229752
GBAF(ncBAF) complex
131229752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Motif
Other DBs
NCBI-GeneID:
131229752
NCBI-ProteinID:
XP_058081746
LinkDB
All DBs
Position
16:72837445..72866210
Genome browser
AA seq
1071 aa
AA seq
DB search
MKTKSSKEKSSKERRAKEREKAKEREIERQNNLQRRDISTNTTTATEATAVAQAPAPVPA
PAPETTESKPSVAAASIEAADTQAAAAEAVPAEPVEAPRRRSGSHKRKAAANSGSSGVSP
LPPPSKRHAKEKSHTASLPLRNGPLTRARQSPNKAAAAAAAEAAAATADAATADAAPQKP
TDPSPPTPPALLSVGEPAAPSVEPVPAIEEPLAPDPALLAEFEAIRSRDTNVHVVPTPAG
WFSWTKVHKLEERALASFFNGKSEERTPDIYMEIRNAIMKRFHSDPQTKVELKDLSEISA
GNLDARQEVMEFLDQWGLINFHPFPPKECAADAVDADSAAKTASLIEKLFRFEMVPPHDN
VGLGTNSSAPAVLPRLLPESAIADELVRPEGPSVEYHCNSCSADCSRKRFHCQTQADFDL
CSECYNAGKFDSGMAPADFILMESAEVPGASGGNWTDQETLLLLEALELYGENWNEIAEH
VATKTKAQCILHFVQMPIEDSFLDGKEDDNGGVQGYSDPSLTNRNSSTLDVVERKDKKTE
GSEEQPMPSPVEKGSSDLSVTETTEGKIAAKEDQPVPKQEGMPKPGDSEAAVEAGQEMSA
SFAVRALKDAFQAIGSLPDPGGLLSFADAGNPVMALVAFLAGLEEPGMAAASARSSLKAM
AEDSPGIQLAARHCFLLEDPPSHWKDPPACERFLTRSVVTVVDGLPQEKDKQVSVSGGGD
LSKNCMDKNNENTVAAGKKSMVPFQDCAGKSHIAGVDDLASAEKVIPSTSKVSGKSASPG
VDTPSTAKKSNDVASVGEAPPNTGKESGDFSLRAEDRQNTELTKDVDASDTVSSEVKGPQ
QAVDSNPTAATGENRGENDTAATHTKSEKNHSPTESTDDHNATRIKRAALTALSAAAVKA
KLLANQEEDEIRELVSLLIEKQLLKLETKLSLFTEMESVIMRVREQLHWARQKLYHERAQ
IIAARLGYSAPTSRPIAPMAPSVPMGKVPMNYVNPGPRPPIMTSQPTLTPQPTLNPQPTL
APQRPPVKRPTRTLTPSNLPFPGTTTGSSTHTTHTFGQETLPLARTKPEQS
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgaaatcatctaaagagaaatcatctaaagagcgcagggcgaaggaaagagag
aaggcgaaagagagagaaatcgagagacaaaataatctccagcgacgagacatttctaca
aacaccaccactgcaaccgaggcaactgcagtggcccaagctccagcccccgtcccggcc
ccagcccctgaaacgacggagtcgaagccttctgtagcagcggcttctatagaggcagca
gacacacaggcagcagctgcagaggcagtaccagcagagcccgttgaagctccaagacgc
cgatctggctcccataaaagaaaagcagcagccaatagcggcagcagcggtgtctctccc
ttgcccccaccttccaagcgccacgcgaaagagaagtcccatactgcttcccttcctctc
cgcaacggccctttgactcgtgcgcgacagtcccccaacaaggcagcagcagcagctgct
gccgaagcagctgcagccactgctgatgccgccaccgccgatgccgctccacagaagccg
accgatccgtcgccaccaacccctcctgctctgttatctgttggagaacctgctgcccct
tccgtggagccagtccctgccattgaggaaccgctggctccagatccggctctccttgcc
gaatttgaagccattagatcccgtgacaccaatgtccatgtggtcccaacacctgcaggt
tggttttcatggacaaaagttcataagctcgaagaaagagccctagcttcattcttcaat
gggaagtccgaagaacggactcctgacatatacatggaaattcgcaatgcgatcatgaag
agatttcactcagacccacagacaaaggttgaattgaaagatctgtcagagatctcagct
gggaatttggatgcgagacaagaagtcatggagttcttagaccagtggggtttaattaat
ttccacccattcccaccaaaggaatgtgctgcggatgctgtggacgcagacagtgcagct
aaaactgcatctttgatagaaaagctgttccgttttgaaatggttccgccccacgataat
gtgggtctggggacgaactcgtctgcgccagctgtgctgcctcggttgcttccggagtct
gctattgctgatgagttggtgcggcctgaggggccttcagtcgagtaccactgcaattcg
tgctcagccgattgttcccgcaagcgcttccattgccagacacaggcagattttgatttg
tgttcagaatgctacaatgctgggaaatttgattctgggatggcaccagctgatttcata
ctaatggaatctgctgaggttccaggtgcaagtggcgggaattggactgatcaggagaca
ctgctccttcttgaagccttagagctttacggggagaactggaatgaaattgctgagcat
gttgccacaaaaacaaaggcgcagtgtatcttgcactttgttcaaatgccaattgaggat
tcatttctggatggcaaggaagatgataatggtggtgtccagggatactctgacccaagt
ttgaccaatagaaattcatctactctggatgttgttgaaagaaaggacaagaaaactgaa
ggaagtgaagagcagcccatgccttcacctgtagagaaaggttcatctgatttatctgtt
accgaaacaacagagggtaaaattgcagctaaggaagaccagcctgtgcctaaacaagag
ggcatgcctaagccaggagattcagaggcagcagtagaggctggtcaggaaatgagtgcc
agctttgcagtccgtgctctgaaggatgcatttcaggccattggttctctgcccgaccct
ggggggttgctttcatttgcggatgcggggaaccctgtcatggcactggtggcattctta
gcaggcctggaagagcctggcatggctgctgcttcagcccggagttcacttaaagctatg
gctgaggattctcctggaattcagctggctgcaaggcattgctttctgcttgaagatcca
ccaagtcactggaaggatccccctgcctgcgagaggtttttgactcgttccgtggtcacg
gtggttgatgggttacctcaggaaaaggacaagcaggtgtcggtttcagggggcggtgat
ttgtcgaagaattgcatggacaagaacaatgagaatacagttgctgcaggaaagaagtcg
atggttccttttcaagattgtgcaggaaaatcgcatattgctggagtggatgatttagcc
tcagcagaaaaggtcataccaagtacttcgaaggtatcaggcaagtcagcttcccctggg
gtagatacaccaagtactgcaaagaaatctaatgatgtagcttcggtgggggaggcacca
ccaaacactgggaaggaatcgggtgatttttctttgcgggcagaggacaggcaaaatacg
gagttgacaaaggatgtggatgcgtcagatacagtttcttcagaagtgaaagggcctcag
caagcagttgattctaatccaacagctgcaactggagagaatagaggtgaaaatgataca
gctgcaacccacactaaaagcgagaagaatcacagcccaacagaaagcactgatgatcac
aatgcaactaggataaaacgtgcagcactcactgcactttcagctgctgctgttaaggct
aagcttcttgcaaaccaggaggaagatgaaattcgagaacttgtctctttgttgattgag
aagcagttgcttaagttggagaccaagctatccctcttcacggagatggaaagtgtgatt
atgagagtaagggaacaattacactgggcgaggcaaaagctttaccacgagcgggcccaa
ataattgcagcccgcctaggttactctgcaccaacgtctagaccaattgcgccaatggcg
ccatcagtacccatgggcaaagttccaatgaattatgtaaacccaggtccaaggccaccg
atcatgacctctcaaccgaccttgacccctcaaccaaccttgaaccctcaaccaaccttg
gcccctcaaaggccaccagttaagcggcccacgaggacattgactccttcaaacttacct
ttccctggcaccaccacaggaagttcaactcatacaactcatacatttggccaagaaaca
cttcctttggcgagaacaaagccagaacaaagttag
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