Magnolia sinica: 131230790
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Entry
131230790 CDS
T09699
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131230790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131230790
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
131230790
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
131230790
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
131230790
NCBI-ProteinID:
XP_058082758
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All DBs
Position
17:complement(26251859..26296279)
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AA seq
333 aa
AA seq
DB search
MREILQQLSLNQTQKIRLEAALQQLEESSKASSSSSSAIITVADTIPVNHEDGVLKGHGT
SELDGEVVATLCGVLERVNKLVYVRALRARYKPEVGDIIVGRVLEIAPKRWRLEVNFSQD
AVLMLSAMNMPDGIQRRRTAVDELNMRSIFEENDVVCAEVRGVHHDGSLQLQARSQKYGK
LERGQLLTVPPYLVKRRKQHFHHLEQYGIDLILGCNGFIWVAEHVEMEENEMIEDQENKL
EENSKTNKRSMTVEELERSYTPLETRRNICRIANAVRVLSMLGFIISVEVIIDTAEASSF
LNIEIKDMLGAEFCVQIAEREAKRRNSLVKKKG
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgagagagatattgcaacagctatctttgaatcagacccaaaagataagattggaagca
gctctccaacagcttgaagaatcatcaaaagccagctcttcttcttcctctgccatcatt
actgtcgccgacaccatccccgtcaaccacgaagatggcgtcctcaaggggcatggcaca
tccgaacttgatggtgaggtggtcgctacactctgtggagtgcttgaacgtgtcaacaaa
cttgtctatgtacgcgccttaagggccaggtacaagccggaggttggagatattattgtt
ggacgtgtccttgagattgccccaaaacgatggagattagaggttaacttcagtcaagat
gcagtactgatgctttcagcaatgaatatgcctgatggcatccagagacggcggacggct
gtagatgaactcaacatgcgcagtatctttgaagaaaatgatgttgtttgtgctgaagtc
cgtggggtacatcatgatggaagcttacaacttcaagcacgaagtcagaagtatggaaag
ctcgagaggggtcagttgctcacagtccctccatacttggtgaagcggcggaaacagcat
ttccaccaccttgaacagtacggcattgatttgatccttgggtgcaatggattcatttgg
gtagccgagcatgttgaaatggaagaaaatgaaatgatagaagatcaagagaacaaactg
gaagagaacagtaaaaccaacaaaagatcgatgactgttgaagaactagaacggagttat
actccactagaaacgaggcgaaacatatgccggattgcaaatgcggtccgtgtcttgtcc
atgttgggtttcattatctctgttgaagtgatcattgacacggccgaagcgagttccttc
ttgaatatcgaaataaaagatatgctcggggcggagttttgtgttcaaatagcagagaga
gaggccaaacgacggaactcgttggtaaaaaagaagggttga
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