Magnolia sinica: 131230880
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Entry
131230880 CDS
T09699
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
msin
Magnolia sinica
Pathway
msin04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
131230880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131230880
03009 Ribosome biogenesis [BR:
msin03009
]
131230880
04131 Membrane trafficking [BR:
msin04131
]
131230880
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msin04147
]
131230880
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
131230880
Ribosome biogenesis [BR:
msin03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
131230880
Membrane trafficking [BR:
msin04131
]
SNARE
SNARE associated proteins
Others
131230880
Autophagy
Aggrephagy
Other aggrephagy associated proteins
131230880
Exosome [BR:
msin04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
131230880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_2
AAA_5
CDC48_2
AAA_16
AAA_33
TIP49
AAA_14
AAA_22
NPHP3_N
RNA_helicase
Parvo_NS1
Mg_chelatase
nSTAND3
AAA_17
AAA_28
IstB_IS21
ATPase_2
ABC_tran
AAA_18
DUF815
AAA_7
NACHT
NB-ARC
Vps4_C
TsaE
Viral_helicase1
Rad17
Bac_DnaA
Lin0512_fam
Motif
Other DBs
NCBI-GeneID:
131230880
NCBI-ProteinID:
XP_058082888
LinkDB
All DBs
Position
17:complement(57669279..57675694)
Genome browser
AA seq
671 aa
AA seq
DB search
MIAAYFLETYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVSPDTEIFCEGEPIRRED
EHRMDEVGYDDVGGVRKQMQQQMTQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSG
KILIARAIANETGAFFFCINGPEIMSNMAGESESNLRKAFLEAEKNAPSIIFIDEIDSIA
PKREKTNGEVEKRIVSQLLTLMDGLKLRAHVIVIGATNRSNSIDPALRRFGRFDREIDIG
VPDEVGRLEVLGIHTKNMKLLEDVDLERIAKDTYGYVGADLAALCTEAALQCIREKMDVI
DLEDESIDAEILNSMAITNEHFKTALGTSNPSALRETVVEVPNIRWEDIGGLESVKRELQ
ETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM
WFGESEANVREIFDKARHAAPCVLFFDELDSIATQRGSSAGDAGGAADRVLNQLLTEMDG
MSAKKTVSIIGATNRPDIIDSALLRPGRLDQLIYIPLPDESSRYQIFKACLRKSPVSKVV
DLRALAKYTQDFSGADITEICQRACKYAIRQNIEKDIERERRTKENPKAMEEDNSEEVSE
IKACHFEEPMKYARRSVSDADICKYQAFAQTLQQSRGLGSDFRFLEQSEAGTGVAGSDPC
AASFGAGDDDL
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgattgcagcttatttcttggagacatatcggcctgtaaggaaaggagatcttttcctt
gtcagaggtgggatgaggagtgtagaatttaaagttatagagactgaccctgcagagtac
tgtgtggtttctccagatactgagatcttctgtgagggggagcctatcagaagggaggat
gaacatagaatggatgaggtgggttatgatgatgttggtggggtgaggaaacaaatgcaa
caacaaatgacccagatacgagagctagttgagctgccacttcggcatcctcagcttttc
aaatcaatcggtgtaaaacctccaaagggaattttgctgtatgggccacctggttctggg
aagatattgatagccagggccattgctaatgaaactggtgccttcttcttctgtattaac
ggaccggagattatgtctaatatggcaggtgagagcgaaagcaatctcaggaaagctttt
ctagaagcagagaagaatgctccatcaattatattcattgatgagattgactcaatagct
ccaaagcgggagaagacaaatggagaagttgagaaacggatcgtttcgcaacttttgact
ttgatggatggattaaaattacgtgcccatgttatcgttatcggagctacaaaccggtca
aacagtatagacccagctctgagaaggtttgggagattcgatcgagaaattgatattggg
gttccagatgaagttggacggcttgaggtcctcggcattcacacaaagaacatgaaactc
ttagaagatgtggatctagaacgaattgcaaaggacacttatgggtatgttggtgctgat
ctcgcagctttgtgcacagaggctgcccttcaatgcatcagagagaaaatggatgtcatc
gacttggaagatgaatccatcgatgctgagatattaaactccatggccattacgaatgag
cacttcaagactgctcttggaaccagcaatccatctgctctgcgtgaaactgttgtcgaa
gtacccaatatcaggtgggaagacattggagggcttgaaagtgtcaagagggagcttcaa
gagaccgtccaatatccagtggagcatccagaaaagtttgagaagtttggcatgtcgccc
tcgaaaggagtacttttctatggcccccctggttgtgggaagaccctactggccaaggca
attgccaatgaatgccaagcaaacttcatcagtgtcaagggtcctgaattgctcaccatg
tggtttggagagagtgaagccaatgttcgtgagatctttgataaggcccgccatgctgca
ccctgcgttctctttttcgatgaactcgactcaattgcaactcagagaggcagcagtgct
ggagacgccggaggtgctgctgatcgagttctgaaccagctcctcactgaaatggatggg
atgtccgcgaagaagacagtgtccataatcggtgccacgaacaggcctgatataattgac
tctgcgctactgaggccaggccgtcttgatcaactgatttacattcctctaccggatgag
agctctcgctatcagatattcaaagcctgtctgagaaaatctcctgtctcaaaagttgtt
gacctgagagctctagccaagtacacacaggattttagcggtgctgatattacagagatc
tgccaacgtgcttgcaagtatgccatacgccaaaatatcgagaaggacatagaaagggag
aggcgaacgaaagaaaatcctaaggctatggaagaggacaatagcgaagaagtgtcagag
ataaaggcctgccactttgaggagcctatgaagtatgcacgcaggagcgtaagcgacgcc
gacatatgcaaatatcaggcgtttgctcaaaccctgcagcagtcaaggggtttaggaagt
gattttcggttcttggagcagtcggaggcaggaactggggtggctgggtcagacccatgt
gcagcttcatttggagccggtgatgatgatttatag
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