Magnolia sinica: 131231057
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Entry
131231057 CDS
T09699
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
msin
Magnolia sinica
Pathway
msin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131231057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msin03041
]
131231057
03009 Ribosome biogenesis [BR:
msin03009
]
131231057
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131231057
Spliceosome [BR:
msin03041
]
Complex A
U2 snRNP components
U2 related factors
131231057
Complex B
131231057
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
131231057
Ribosome biogenesis [BR:
msin03009
]
Eukaryotic type
90S particles
Helicases
131231057
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
ResIII
AAA_19
nSTAND3
SRP54
T2SSE
ABC_tran
AAA_30
NACHT
AAA_7
TsaE
G-alpha
PhoH
Motif
Other DBs
NCBI-GeneID:
131231057
NCBI-ProteinID:
XP_058083124
LinkDB
All DBs
Position
17:complement(3635675..3643845)
Genome browser
AA seq
720 aa
AA seq
DB search
MSTERKRKVSLFDVVDTTTVSAKLKSNGSFSGASTNHLNGRPYSQRYYEILEKRKTLPVW
QQKEEFLQVLKESQTLILVGETGSGKTTQIPQFALEAGSHLDKDRRKMVACTQPRRVAAM
SVSRRVAEEMDVTIGEEVGYSIRFEDCSGPKTILKYLTDGMLLREAMTDPLLERYRVIIL
DEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFRGYFNDAPLMKVPGRLHPV
EIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKITKEINNLGDQV
GPVKAVPLYSTLPPAMQQKIFEPAPPPLKEDGPPGRKIVVSTNIAETSLTIDGIVYVIDP
GFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTY
PEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKLG
EIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFLRPREAQKAADEAKARFGH
IDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKAADNVRQQLVRIMARFNLKLCSTD
FNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEY
VLTSRNFIRTVTDVRGEWLIDIAPHYYDLANFPSCEAKRVLERLYNKREREKGENKNRGK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggagcggaaaaggaaggtgagcttgttcgatgtggtcgacacgaccaccgtc
tccgccaaactgaaatccaatggctctttcagcggagcctcgacgaaccatttgaatgga
cggccgtactcgcagcgttactacgagattcttgagaagaggaagacgcttccggtatgg
cagcagaaagaggagttcttgcaggtcctgaaggagagccagaccttgatcttggttggt
gaaaccggaagcgggaaaacaacccagattcctcagtttgctctggaagctggtagtcat
ctagacaaagataggcggaagatggttgcttgtacccagcctcgtagagtggctgcaatg
tctgtttcccgccgagttgctgaagagatggatgtgacaataggagaagaagttggttac
agcattcgttttgaggattgcagtggtccaaaaacaattctgaagtacctaacagatggt
atgcttctaagagaagcaatgacggatccacttctggaaagatatcgtgtgataattctt
gatgaggctcatgaacggactttagcaacagatgttctatttgggcttctgaaggaagtg
ctgaagaatagacctgacttgaaactagttgtaatgagtgccacacttgaggctgagaag
ttccgtggctatttcaatgatgcgccactcatgaaggttcctggaaggcttcaccctgtg
gagattttctatacacaggaacctgagagggattacctcgaagctgcgattcgaacagtc
gtgcagatacacatgtgtgaacctgctggtgacatacttgttttcctcactggagaggag
gagatagaagacgcatgcaggaagataacgaaagaaattaataatttgggtgaccaggtg
gggcctgtgaaagcagtaccattatattctacattgcccccagctatgcagcagaagata
tttgagcctgctccacccccactgaaggaagatggtcctcctggaaggaagattgttgtc
tcaaccaacattgcagaaacatccctgaccattgatggaatagtttatgttattgatcct
gggttcgctaagcaaaaggtttataacccaagagtgcgtgtggaatctttgctggtctcg
ccaatatcaaaggcaagtgcacatcagagatcagggcgtgctggtaggacgcaacctggg
aaatgctttagactctacactgaaaagagtttcaacaatgatcttcagccacagacatat
ccagaaatactgcggtcaaatctagcaaacaccgttctcaccttgaaaaagcttggaatt
gatgatctggtccattttgatttcatggaccccccggcccctgaaacattgatgcgggct
ttggaggtattaaactacttgggtgccttggatgatgaggggaacttgactaagttgggg
gaaatcatgagtgagtttcctctggatcctcaaatgtcaaagatgcttgtggtcagtcca
gagttcaattgttccaacgaaatcctctcagtatctgccatgctctcagtacccaattgc
tttctccggcctagggaagctcagaaagctgcggatgaagcaaaagctcggtttggccac
atcgatggggaccacctcacgcttttgaatgtgtatcatgcttacaagcaaaacaatgaa
gatccatcatggtgttatgagaattttgtcaatcaaagggcattgaaggctgctgataat
gtgagacaacagcttgtgcgtatcatggccaggttcaacctcaagctatgcagcacagat
ttcaacagccgtgattattacatcaacattagaaaggcaatgcttgctgggtattttatg
caggtagctcaccttgagcgtactggtcactacttgacagtgaaagacaatcaggtagtt
cacttacatccttccaactgcctggatcacaagccagagtgggtcatttacaatgagtat
gtcctgaccagtaggaatttcattcgcacggttacagatgtccgcggcgagtggctaata
gacattgctccgcactactacgatcttgccaacttcccctcatgtgaggcgaagcgggtt
ctcgagaggctgtacaacaagcgtgagagagagaagggggagaacaagaacaggggtaag
tga
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