KEGG   Magnolia sinica: 131231177
Entry
131231177         CDS       T09699                                 
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
msin  Magnolia sinica
Pathway
msin03018  RNA degradation
msin03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:msin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    131231177
  09123 Folding, sorting and degradation
   03018 RNA degradation
    131231177
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msin03019]
    131231177
   03041 Spliceosome [BR:msin03041]
    131231177
Messenger RNA biogenesis [BR:msin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     131231177
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     131231177
Spliceosome [BR:msin03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    131231177
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 131231177
NCBI-ProteinID: XP_058083271
LinkDB
Position
17:complement(11570907..11584220)
AA seq 202 aa
MNYPTPEYKKFPLLIWRILSHSLQRVEIPRALFFCQLLFWVRSHFSEYKISKMLPLSLLK
TAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKY
LRVPDEVIDKVQEETSKSRSDRKPPGVGRGRGRGREEGGSGRPAKGIGRGQDDGSKGMGG
GRGRGGPGSKGSGGRGGGRGRG
NT seq 609 nt   +upstreamnt  +downstreamnt
atgaattaccctacgccggagtataaaaaatttcctcttttaatatggagaattttgagt
cattctcttcaaagagtagaaatccctcgcgctttatttttttgccaacttctcttctgg
gttcgatcgcatttctcagaatacaaaatctcgaaaatgcttcctctttctctactgaag
acggcacaagggcatccgatgttggtggagctgaagaatggggaaacgtacaatgggcac
ttggtgaattgcgatacgtggatgaacattcatctccgtgaagtcatttgtacttcgaag
gatggagacaggttttggcggatgccagaatgttatatccgtgggaacacgatcaagtat
cttcgagttcctgatgaggtgattgataaagtccaggaagaaaccagcaaaagccgctca
gataggaagccacctggtgtgggccgtggaagaggaagaggtagggaggaaggtggcagc
ggcaggcctgctaaaggtattggacgtggccaagatgatggtagtaaaggaatgggaggt
ggccggggcaggggcggaccaggcagtaaaggcagtggcggtagaggtggtgggcgtggg
cgtggctga

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