Magnolia sinica: 131231887
Help
Entry
131231887 CDS
T09699
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131231887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131231887
03036 Chromosome and associated proteins [BR:
msin03036
]
131231887
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131231887
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
131231887
mRNA degradation factors
5'-3' decay
Decapping complex
131231887
Chromosome and associated proteins [BR:
msin03036
]
Eukaryotic type
Gene silencing
piRNA pathway
131231887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
TFIIA
Dishevelled
Aldedh
VPS13_N
Motif
Other DBs
NCBI-GeneID:
131231887
NCBI-ProteinID:
XP_058084216
LinkDB
All DBs
Position
17:70813988..70832552
Genome browser
AA seq
501 aa
AA seq
DB search
MNPRGRYPPGIGNGRGGNPNTNPNFHVRNPQQQQQQQQQQQQQYVQVQRNMMQQHYQQQQ
QQHQQQQQQWMRRNSQMGPDTATAEVEKAVVQSEGVDSSSQDWKARLKIPPRDTRFKTED
VTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAA
FCIPALEKIDQDKNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIM
RLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPGN
RQILLFSATFPVTVKDFKDRYLQKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFS
KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC
TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIE
QELGTEIKQIPPQIDQAIYCR
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgaggggccggtatccgcccggtattggcaacggccgcggcgggaatccgaat
acaaaccctaatttccacgttagaaatcctcagcagcagcagcagcagcagcaacaacaa
caacagcagtacgtgcaggtgcagcggaatatgatgcagcagcactatcagcagcagcaa
cagcaacatcaacagcaacaacagcaatggatgagaaggaatagtcaaatggggcctgat
acggccacagccgaagtggagaaggccgtagtacagtctgaaggtgttgattctagttct
caagattggaaagcacgactaaagataccaccacgtgatacacgtttcaagacagaggat
gttactgcaaccaaaggaaatgaatttgaggactattttctgaagcgagagcttcttatg
gggatatatgagaaaggatttgaaaggccttctcctatccaggaagaaagtatccctatt
gctttaactggaagcgacattcttgctagagctaaaaatggtactgggaagacagctgca
ttttgcattccagcactggaaaagattgaccaagataagaatgtcattcaagttgttata
ctggttcctacacgagagttggctcttcagacatcacaagtttgtaaggagctcgggaag
catttaaagattcaggtcatggtcaccactggaggtaccagcttaaaggatgatatcatg
cgtttatatcaaccagtccatttgcttgttggaacaccaggcagaatacttgatcttgca
aagaaaggtgtatgcatcctgaaagattgctcaatgcttgttatggatgaggctgacaag
cttttatctccggagtttcaaccatcagtagaacagttaattcgctttcttcctggaaat
cggcagattttgttgttttcggcaacatttcctgtaaccgttaaagatttcaaagacaga
tatttgcagaagccttacatcattaatctcatggatgagctcactcttaagggtataact
caatactatgcttttgtagaagaaagacagaaggtccactgcctaaacactcttttctcc
aagcttcaaatcaaccaatcaattatattttgcaactctgtgaatcgggtagaactgttg
gcgaagaaaattacggagcttggttattcttgcttctacattcatgcaaagatgctgcag
gatcaccgtaaccgagtcttccatgacttccgtaatggtgcttgcaggaatcttgtatgt
acagatttgtttactaggggaattgacattcaagcagtaaatgtggttatcaattttgat
ttccccaagaactccgagacttatctgcatcgggttggtcgctcgggaaggtttggccac
cttgggttagcagtgaacttaatcacatacgaggatcgtttcaacttgtatcggatcgag
caagagcttgggactgaaataaagcaaattccaccacaaattgaccaggctatctactgc
cggtga
DBGET
integrated database retrieval system
