Magnolia sinica: 131231927
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Entry
131231927 CDS
T09699
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
msin
Magnolia sinica
Pathway
msin03430
Mismatch repair
msin03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
131231927
03460 Fanconi anemia pathway
131231927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msin03400
]
131231927
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
131231927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
131231927
NCBI-ProteinID:
XP_058084299
LinkDB
All DBs
Position
17:complement(11605420..11638878)
Genome browser
AA seq
927 aa
AA seq
DB search
MEGVVNSPSIRPINKGVIHRICSGQVILDLSSAVKELVENSLDAGASSIEISLKEYGEES
FKVIDNGCGISPSNFQALALKHHTSKIADFPDLQSLTTFGFRGEALSSLCALGNLTVETR
TKNESVGTRLTFDHSGLVTSERKTARPIGTTVTVEKLFSTLPVRNKEFSRNIRREYGKLI
SLLNAYAVIAKGVRLVCTNTASKNIKSVVLKTPGSSSLKDNIVTVFGMNTFACLEPLSIC
VSDGCKVEGFLSKPGQGSGRTLGDRQFFYVNGRPVDMPKVSKLINELYKSSNSRQYPVAI
MNFTIPTKAYDVNVTPDKRKIFFSDEASLMLSLREAIESIYSPSLCSYSINSFEDPKKGS
KKEKDTFELDAPCDEPHCSPPKSPRGSVQKDVACWPEQTTDDTSLDMVEEGIPDSDVAEG
IVQCKEETPLLKNSALISSYSMEKSKRFSAYQPKQLKTPISNTRNDKHAMYGGREVEKDS
AENVDSSSRSKVVQSSLTKFVTVNKRKHEDTCTVLSELPVLRSEMLPCQVRKTHPEMHAS
VSGSLLSQHECDDSTDMDKNELSEHSKAFHVLNEVRTPPLARSCIDDRVSAEENVTSQEK
ASPLVDVGSKAFSGKSLENTLDDLSSTAPLVQSSNVILDGPVPCSGSEICSVLQFSINDL
RTRRSQRLSRLHSNSSAPERMNIKRCYAAATLENSQPENQEGKAKALAAACNELERFFRK
EDFGRMEVIGQFNLGFIIGKIDQDLFIVDQHAADEKYNFERLSQSTILNQQPLLQPMRLE
LSPEEEVIASIHMEIIRKNGFTLTEDMHAPPGHHFLLKAVPFSKNITFGAEDVRELISTL
ADSQGECSVISSYKMDTQDSICPSRVRGMLASRACRSSVMIGDPLGKNEMQKILQHLVGL
KSPWNCPHGRPTMRHLIDLTTVHKSYG
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagtagttaattctccatccataaggcctatcaataagggtgtcattcacagg
atttgctctgggcaagtaattttagatctttcatccgctgtcaaggagttggtagaaaac
agcttggatgctggtgcaagcagtattgaaataagtttgaaagagtatggcgaagaatcc
ttcaaggttatagataatggttgtggcatttcacctagtaattttcaggctcttgcactc
aagcatcatacttctaaaatagcagattttcctgatcttcagtctttgacgacttttggc
ttcagaggagaggcactaagctccctttgtgcattggggaacttaactgttgaaacgaga
acaaaaaatgagtctgttggcacgcgcttgacgtttgaccattcgggtttggtaacatct
gaaaggaagacagcacgaccaattggcacgaccgtcactgttgagaagctgttctccact
ttgccagtgcggaataaggagttcagtcgcaatatccgaagggaatatggaaagctcatt
tctttattgaatgcatatgcagttattgcaaaaggagtgcgactggtttgcaccaacacc
gccagtaaaaatataaagtctgtggtgcttaaaacccctggaagcagttcactcaaagat
aatattgtaacagtatttggcatgaacacctttgcatgcttggaacctttgagcatatgt
gtatcagatggctgcaaagtggaaggctttctttccaagcctgggcaaggcagcggacgt
acccttggagatagacagttcttttatgtaaatggtcggccagtggatatgcctaaagtc
agcaagcttataaatgaactgtataaaagttcgaactcccggcagtatcctgttgcaatc
atgaattttactataccaactaaagcatatgatgtcaatgtaactccggataaaaggaaa
atattcttttctgatgaagcctcccttatgctttccttaagagaggcgatagaaagcatc
tactccccaagcctctgtagctattcaattaacagctttgaggatccaaagaagggttca
aagaaggaaaaggatacatttgaattggatgcaccttgtgacgaaccccattgctctcca
ccaaaatctcctagaggcagtgtgcaaaaggacgttgcgtgctggccagaacaaaccacg
gatgatacttctcttgacatggttgaagagggcattccggattcagatgtggcagaagga
atcgttcaatgcaaggaggaaactcccttgttgaagaatagtgctcttattagcagctac
agcatggagaagtccaaaagattttctgcatatcagcctaagcagctgaaaactccgata
tctaatacaagaaatgataagcatgccatgtatggtggaagagaagttgaaaaggattct
gcagaaaatgttgattcatccagtcgttcaaaagttgttcagtcttcacttaccaagttt
gtgaccgtgaataagaggaagcatgaagatacttgtacagtattgtcagaattgccagtg
ctaagaagtgaaatgcttccttgtcaagtgaggaaaacacatccagaaatgcatgcttca
gtctcaggttcccttcttagtcaacatgaatgtgatgattctactgacatggataaaaac
gaactttcagagcattccaaggcattccatgttctgaatgaagtgagaactccacctttg
gccagaagctgcattgatgatagagtgtctgctgaggagaatgtcacaagtcaggagaaa
gcatcacctctcgttgatgtgggttcaaaagctttttctggcaaaagtctagaaaataca
ctggacgatctatcaagtacagctccattggtacaatcttccaatgtgattttggatggt
ccagtcccttgttctggttcagagatatgttctgttttgcaatttagtatcaatgatctt
agaaccaggaggagccagagactgtcaagattgcattccaacagttctgcacctgaaaga
atgaatattaaaagatgctatgctgctgcaacattggagaattcccaaccagaaaatcag
gagggaaaggcaaaggctctagctgcagcatgtaatgagttagagagattctttaggaaa
gaagattttggaagaatggaggttattgggcagttcaatcttggttttatcatcggcaag
attgatcaagacttatttattgtagatcagcatgctgcagacgagaaatacaactttgag
cgtctctcgcaatcaaccatcttgaaccaacagcctctgcttcagccaatgagattggaa
ttatctcctgaagaagaagtaatagcctcaatacatatggaaattatcaggaaaaatggc
tttactctgactgaagacatgcatgctcctcccggccaccattttctattaaaagctgtt
cctttcagtaaaaacataacttttggagctgaagatgttagggagcttatttcaaccctc
gctgacagtcaaggggagtgctcggtgatcagcagttacaaaatggacactcaagattct
atttgtccatcaagagttcgcggtatgctggcatcgcgtgcctgtcgatcatctgttatg
ataggtgacccgctaggaaaaaatgagatgcaaaagatacttcagcatttggtgggcctc
aagtccccttggaattgcccacatggcagaccgacgatgcgccacttgattgacttgaca
actgttcacaaaagctatggttaa
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