Magnolia sinica: 131231960
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Entry
131231960 CDS
T09699
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
msin
Magnolia sinica
Pathway
msin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131231960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msin03041
]
131231960
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131231960
Spliceosome [BR:
msin03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
131231960
Complex B
131231960
Complex C
U2 SnRNP specific factors
131231960
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
131231960
NCBI-ProteinID:
XP_058084368
LinkDB
All DBs
Position
17:complement(4693539..4707898)
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AA seq
776 aa
AA seq
DB search
MSKRKFGFEGFGINRPATYNFERSQAPQRLYVPPSSRSGSHDNYEDHDLDNIDYAEGDDG
PKDRADGGDEEIDPLDAFMEGIHEEMRAAPPPSKEKEKADKFRDDEEDDDPVESFLRAKK
DVGLQLASEVLQAGYDSDEEVYAAAKAVDAGLIEYDSDDNPVVIDRKKIEPIPPLDHTSI
DYEPFNKDFYEEKDSISGMSDEDVSEYRKSLSIRVTGFDVPRAIKLFEDCGFSTALMSSI
TKQGYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEIGKEEGPI
GVICAPTRELAHQIYLEAKKFSKSNGIRVAAVYGGMSKLDQFKELKAGCEIVVATPGRLI
DLLKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPYKVERL
AREILVDPVRVTVGAVGMANEDITQVVNVIPSDAEKMPWLLEKLPGMIDDGDVLAFASKK
TTVDEIESQLIQMGFKVAALHGDKDQASRMEILQKFKSGTYHVLIATDVAARGLDIKSIK
TVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNSLVAAGQNVSVE
LMDLAMKDGRFKAKRDARKGSGGKKAGGRGKGGGSGSGRGVRGVDYGLGIGYNPESSSTP
SHTVPNRSAAVNALRTGMMVQFKSNFVAATPTSDSQNEGRNNQSTFASKRPTLPGFVSGG
SIGGEALRQQTSSLFNSTSKPGGNMGDNSKENGSQKKPESSRDRPRERRRPSGWDR
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacggaaattcggattcgaaggattcggcatcaatcgcccggcaacctacaat
ttcgagcggtcgcaagccccgcagaggctctacgttcctccttcctcccgctccggtagc
cacgacaactacgaagaccacgacctcgataacatcgactacgctgagggcgatgacggc
ccgaaggatcgcgctgatggtggcgatgaggagatcgacccgctcgatgcgttcatggag
ggaattcacgaggagatgcgggcggccccaccgccttcgaaggaaaaagagaaggcggac
aagttccgagatgacgaggaggatgacgatccggttgagagctttctaagggcgaagaag
gatgttggattgcagctggcttcggaggttcttcaagctgggtatgattcggacgaggag
gtctatgctgcggcgaaggcagtcgatgcagggttgatcgagtatgattcggatgataat
ccagtggttattgatagaaagaagattgaaccgatcccaccattagatcacactagcatc
gattatgagccgtttaacaaggatttttatgaagagaaagattccatttcaggaatgagt
gatgaagatgtctccgaatatagaaaaagtctttctatacgtgttacgggttttgatgta
cccagagcaattaagctgtttgaagattgtggattttctactgcactaatgagttctatc
acaaaacaaggctatgagaagccaactccaatacagtgccaggctctacccattgtgctc
tctgggagggatatcattggtattgcaaaaactggttctggaaagactgctgcatttgtg
cttccaatgattgtccatatcatggaccagcctgaaattgggaaggaagagggtccgata
ggagtgatatgtgcacccacgagagaattagctcatcagatatatttagaggcaaagaaa
ttctcaaaatccaatggtatacgagttgctgctgtctacggtggaatgtctaaactcgac
caatttaaagaacttaaggcgggttgtgagatagttgttgctactccagggagattgatt
gacttgctaaagatgaaggcgctgacaatgctgagggcaacttacctagttcttgatgag
gctgatcgaatgtttgatcttggatttgaaccacaaataaggtccattgttggtcaaatt
agacctgatcgtcaaaccttgcttttttcagcgaccatgccatacaaagtcgaacggttg
gcccgagaaattctcgttgatcctgtaagagttacagtgggagcagttggaatggccaat
gaagacattacccaagttgttaatgtaattccttctgatgctgagaagatgccttggctt
cttgaaaagctgcctggaatgattgatgatggagatgttttagcgttcgcttcaaagaaa
actacagtggatgagattgaatctcagcttattcagatggggtttaaagttgcagctctt
catggtgacaaagaccaggcttctcgaatggagatcttgcaaaagttcaaatcaggaact
taccatgttctcattgcaactgatgttgctgcacgtgggcttgacatcaagtcaattaag
acagttgtgaactttgatattgctagagatatggacatgcatgtacatcgtattggtaga
acaggtcgtgctggagataaggatgggaccgcctacactcttatcacccagaaggaagca
cgctttgctggtgagctggtaaacagtttggttgctgctggccagaatgtgtctgtggaa
ctgatggatctcgctatgaaggacgggaggttcaaggccaaaagggatgcaagaaaagga
tctggtgggaaaaaagctggagggagagggaaggggggtggcagtggcagtgggcgaggc
gtccgtggtgtggattatggccttggcattggctataatcctgagtcatcaagcacacca
tctcataccgttccaaatcgatcagctgccgttaatgcactgaggacagggatgatggta
cagttcaagagcaacttcgtagctgcgacaccaacatccgattctcaaaacgagggcaga
aataaccaaagtacatttgccagtaagcggccaacactgcctggttttgtgtccggtggt
tcgataggtggagaagcattgagacaacagacaagtagtttgttcaattccacttctaag
ccgggcggaaacatgggtgacaattctaaagaaaatggaagtcagaagaagcccgaaagt
tccagggataggcctcgggaaagacgacggccctctggttgggatcgataa
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