Magnolia sinica: 131232495
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Entry
131232495 CDS
T09699
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
msin
Magnolia sinica
Pathway
msin03022
Basal transcription factors
msin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131232495
09124 Replication and repair
03420 Nucleotide excision repair
131232495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msin03021
]
131232495
03400 DNA repair and recombination proteins [BR:
msin03400
]
131232495
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
131232495
Transcription machinery [BR:
msin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
131232495
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
131232495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
131232495
NCBI-ProteinID:
XP_058084749
LinkDB
All DBs
Position
18:30863268..30892537
Genome browser
AA seq
771 aa
AA seq
DB search
MTGHGEKSRPFKKHKSSTNKDTHRNPPTDYPEDFDEDNPHGDYDNDGSESKKHDFTKLEL
KPDHANRPLWACGDGRIFLETFSALYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAV
SVGLETETIITVLNKLSKTKLPKEMIDFIYASTSNYGKVKLVLKKNRYFVESQFPEVLKK
LLRDDVISRARIFSHEGSDSFTISKTLGEVEGGHEDLLNRVDVAAVAEEKETHSFEIDPA
QVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLNMELKPQAQPRPYQEKSLSKMFGNGRA
RSGIIVLPCGAGKSLVGVSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFT
SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR
KVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC
PMTKEFFAEYLKKENSKKKQALYVMNPTKFRACEFLIRFHEQQRGDKIIVFADNLFALTE
YAMKLRKPMIYGATSHNERTRILYAFKHSPDVNTIFLSKVGDNSIDIPEANVIIQISSHA
GSRRQEAQRLGRILRAKGRLQDRMTGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQG
YSFKIITSLPPPDSGAELSYHRLDEQIGLLAKVLNAGDDQVGLEQLDEDADDIALQKARR
SVGSMSAMSGASGMVYMEYSTGKNKYPGQGQIKSKPKDPAKRHLLFKRRFG
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgacaggccacggtgaaaaatctcgaccgttcaagaaacacaaatcatctacaaacaag
gacacccacagaaatccccccaccgattaccctgaagacttcgacgaagacaacccccat
ggtgattacgacaatgatggctcagaatccaagaagcacgatttcacgaaattggagctg
aagcccgaccatgccaaccgtccgttgtgggcctgtggcgatggtcggatcttcctcgag
acgttctcagccctctacaagcaggcttatgacttccttattgcgatcgcggagcctgtc
tgccgccctgaatccatgcacgagtacaacctcaccccacattccctctacgcggctgtc
tctgttgggcttgagactgagaccatcatcacagtcttgaacaagttgtcgaagacgaag
cttccgaaggaaatgattgatttcatatatgcatcaacgtcgaattatgggaaggtcaag
cttgtgctgaagaagaatcggtactttgtggagtcccagtttcctgaggtacttaagaag
ttgctcagggatgatgtcatatctcgtgcgaggattttctctcatgagggaagtgattca
ttcaccattagcaaaacattgggcgaagtagaaggtggtcatgaggacttgctcaataga
gttgatgtggcagctgtagccgaagaaaaggaaacacattcctttgaaattgaccctgct
caggtcgaaaatgtgaagcaacgatgcttgccaaatgctctaaattatcccatgctggag
gaatatgacttcagaaatgatacggtgaatcctgacttgaacatggaattaaagccacaa
gcacaaccacgaccataccaggaaaagagtctaagcaagatgtttggaaatggtagagca
agatctggcatcattgtactcccttgcggtgcaggcaagtcattagttggtgtctctgca
gcctgtcgaatacgaaagagctgcctttgcttagcaacaaatgctgtttctgtggatcaa
tgggcttttcagttcaagctatggtcaactatacgtgatgaccagatttgtcgttttacg
tctgatagcaaggaaagattccgtggtaatgctggtgtggttgtgaccacttataacatg
gttgcttttggtggtaaaagatctgaagagtctgagaaaatcattgaagaaataagaaat
agagaatggggattgcttctcatggatgaggtgcatgtggttcctgcgcacatgtttagg
aaggtcattagtattaccaaatctcactgcaaacttgggctcactgcaactcttgtgaga
gaggatgagcgcatcacggatttgaacttcctcattggtcccaaattgtatgaagctaat
tggttggacttggtgaaaggaggattcatcgcgaatgtccagtgcgcagaagtatggtgt
ccaatgacaaaggaattctttgctgaatacttgaaaaaagaaaattctaagaagaagcag
gccttatatgtgatgaacccaactaaattcagagcttgtgagtttctgatccggtttcat
gaacaacagcgtggagataagataattgtgtttgctgataatctttttgcacttaccgag
tatgcaatgaaactccggaaaccaatgatttatggtgcaaccagccacaatgagagaaca
agaatactctatgcattcaagcacagtccagatgtcaacacgattttcctttccaaggtg
ggagataactcaatagatattcctgaagctaatgtgataatccagatctcatctcatgct
ggttcaaggcgtcaggaagcccaacgactgggccgaattttgagggcgaagggtcgactt
caagataggatgacaggaggcaaggaagagtacaatgctttcttctattccctggtttcc
acagatacacaggagatgtattactctactaaaaggcagcaatttttgatcgaccagggt
tatagctttaagatcattacaagcttgcctccacctgattcaggagctgagctgagttat
caccgcctagatgagcaaattggactactcgctaaggtcctgaatgctggtgatgatcaa
gtcggtttggagcagttggatgaagatgcagatgacattgctctccagaaagcccgtcgc
tcagtgggatcaatgagcgccatgtctggagcaagcgggatggtttacatggaatacagc
accggaaagaacaagtatcctgggcagggccagatcaaaagtaagcctaaggatcctgct
aagcggcacctcctgtttaaaagacgctttggttaa
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