Magnolia sinica: 131232598
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Entry
131232598 CDS
T09699
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
msin
Magnolia sinica
Pathway
msin03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
131232598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msin03009
]
131232598
Ribosome biogenesis [BR:
msin03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
131232598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Utp13
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_Nup120_160
WD_LRWD1
Beta-prop_NWD2_C
PEP5_VPS11_N
Beta-prop_WDR19_1st
Beta-prop_Vps41
Ge1_WD40
Beta-prop_WDR75_2nd
Cytochrom_D1
WD40_like
WDR54
SGL
Nbas_N
Beta-prop_LRRK2
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
131232598
NCBI-ProteinID:
XP_058084922
LinkDB
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Position
18:4756858..4772421
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AA seq
884 aa
AA seq
DB search
MASGSLKRNYHCVPSLQQFYTGGPFAVSSDGSFLTCACDDKIKIVDSSNASIRATLEADT
ESVTALALSPDDKLLFSASHSRLIRVWDLSSLKCLRSWKGHEGPVMGMACHSSGGLLATA
GADRKVLVWDVDGGFCTHYLKGHKGVITSIMFHPDPNCLFLFSGSDDATVRVWDLSTKKC
MAVLEKHFSAVTSLALSEDGWTLLSAGRDKVVNLWDLHSYSFKMTVPTYEVLETVCVIHN
GTGFSACLNKHNGKKKKTGSPPVCFLTTGERGIVRIWSSEGAVCIYEQRYTDATVSSDED
DVRRGFTSAVILPSDQGLLCVTADQQFLFYCPAESLEGSFHLNLNKRLVGYNEEIVDLKF
LGEEEQFLAVATNLEQVRVYDLASMSCSYVLAGHADIVLCLDTCVLSSGKTLIVTGSKDN
TVRVWEDNNRCSIGVGTGHMGAVGAVAFSKKRKSFFVSGSYDRTLKVWSLDGLLENGSEV
INLKVKAVVAAHDKDINSLAVAPNDNLVCSGSQDRTACIWRLPDLVSVVVLRGHKRGIWS
VEFSPVDQCVITSSGDRTIKIWAISDGSCLKTFEGHTSSVLRASFLTRGTQFVSCGADGL
VKLWTIKTNECIATYDEHEAKVWALAVGKKTEMLATGGGDAVVNLWHDCTAADKEEAFRR
EEEGVLKGQEMENAVSVADYTKAIQLAFELRRPHKLFDLFAELCREREAEDQIEKALHVL
GKEEIHLLFEYVREWNTKPKLAHVAQFVLFQVFNILPPTEIIEIKGISELLEGLIPYSQR
HFSRIDRLLRSTFLLDYTLTGMSVIDPETDSLESKDGSMLHSDDVQASMPFSAEIDGREQ
NQGSTEVREEKVSSKKRKSSKSRSGAKKFKETKYVDGSAVALQA
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgggagcttgaagaggaactaccactgcgtgccttctctccagcagttctac
acgggtggccccttcgccgtctcctccgacggctcgtttctaacgtgcgcctgcgacgac
aagataaagatcgtggactcgtcgaacgcgtcgataagggcgaccctggaagcggacact
gagtcagtcaccgcgttggctctgagtcccgacgataagctcctcttctccgccagccat
agcaggcttattagggtttgggatctctcctctctcaaatgcctgcgttcttggaagggg
catgagggtcctgtgatgggcatggcctgtcattcttccgggggcttgcttgctactgca
ggagctgataggaaagttcttgtttgggatgttgatggaggcttctgtacacattacttg
aaaggtcacaagggagtcataacgagcatcatgttccatcctgatccaaactgcctattt
ctgttctctggaagtgatgatgcaactgttagagtttgggatctttctactaaaaagtgc
atggcggtgctagaaaagcatttctcggcagttacttctttggcactatctgaagatgga
tggaccttgcttagtgctggaagagataaggttgtaaatttatgggaccttcatagctac
agcttcaagatgactgtgccaacatatgaagtgcttgaaaccgtttgtgttattcacaat
ggaactggcttttctgcttgtttgaacaagcacaatgggaagaagaagaaaactggctca
ccaccggtgtgctttttgactacaggagagcgtggtattgtacgaatttggagctctgaa
ggtgcagtctgcatatatgagcaacgatatacagatgccactgttagttcggatgaggat
gatgtcagacggggtttcacatcagctgttatattaccttcggatcaaggattgctctgt
gtcacagctgatcagcagtttctattctattgtccagcagagtctcttgaggggtcattt
cacttaaatctaaacaaacggcttgttggttacaatgaagagattgtggatcttaagttt
ttgggtgaggaggaacaatttcttgccgtagctacaaacttggaacaggtgcgagtgtat
gaccttgcatccatgtcatgttcctatgtattggcagggcacgcagacatcgttctatgc
cttgacacatgtgtcttaagttctgggaagacacttattgtaactggaagcaaggacaat
actgttagagtatgggaagataacaacagatgctccataggtgttggtactggccatatg
ggagccgttggagctgtggctttttcaaagaagcggaagagtttttttgtcagtggtagc
tatgatcgtacccttaaggtatggagtttggatggtctcttagagaatggtagtgaagtc
attaatctgaaagtcaaagcagttgttgcggctcatgataaagatattaattctcttgct
gtggcgccaaatgataatcttgtttgcagtggttcccaggatcgtactgcctgcatatgg
aggcttccagatttagtatcagttgtagtacttagagggcacaaaagggggatttggtcc
gtagaattctctcctgtggatcagtgcgtgataacttcttccggtgatagaacaataaaa
atatgggccatatctgatggttcgtgcttaaaaacattcgaaggccatacatcaagtgta
ctgcgagcctctttccttactcgcggcacccagtttgtttcttgtggtgctgatggcttg
gtaaagctatggacaatcaaaacaaatgaatgtattgcaacctatgatgagcatgaggcc
aaggtttgggcattagctgtcgggaaaaagacagaaatgcttgcaactggtggtggtgat
gctgttgtcaatttgtggcatgactgcactgctgcagataaggaggaagcttttcgtaga
gaagaggaaggggttctgaaaggtcaagagatggaaaatgctgtatcagtggctgattat
accaaagcaattcaacttgcattcgaacttcgcagaccccacaaactcttcgatttattt
gcagagctttgcagggagagagaagctgaggatcaaatagagaaagctctccatgtcctt
gggaaagaagagatccatctgctttttgaatatgttcgagagtggaatacgaagccaaag
cttgctcatgttgcgcaatttgtgcttttccaggttttcaacatccttcctcccactgag
attattgagataaaaggcattagtgagctccttgaaggtctcataccctactcacagagg
catttcagcaggatagacaggcttctacgaagcacctttttattggactacactctgacc
ggaatgtctgttattgatcctgaaactgactccttagagtccaaagatggatccatgttg
cactcagatgatgtgcaagcaagcatgccattctcggctgaaattgatggcagggagcag
aatcagggttcgactgaggtaagggaagagaaggtttcctcaaagaaacgaaaatcaagc
aaatcgagaagcggggcaaagaaattcaaggagaccaaatacgtggatggatcggctgtt
gcactacaggcctaa
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