Magnolia sinica: 131233055
Help
Entry
131233055 CDS
T09699
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
msin
Magnolia sinica
Pathway
msin04120
Ubiquitin mediated proteolysis
msin04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
131233055
04120 Ubiquitin mediated proteolysis
131233055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msin04121
]
131233055
Enzymes [BR:
msin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
131233055
Ubiquitin system [BR:
msin04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
131233055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-HC5HC2H
zf-RING_5
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
131233055
NCBI-ProteinID:
XP_058085611
LinkDB
All DBs
Position
18:complement(3213841..3225007)
Genome browser
AA seq
532 aa
AA seq
DB search
MMKFRTYAGFSLVGAITIIYHAFSSRGQFYPATVYLSASKISLVVLMNMCLVIMCALWQL
TKFLFLGSLREVEVERLNEQSWREVMEIIFTLTIFRQDFSVTFLAMVTALLLIKAWHWMV
QKRVEYIETTPSVPTLSHVRIVSFIVFLLALDCLIFYGSFKYLIQTWRPSVALFFAFEYM
ILATTTLSTFAKYVFYVCDMLMEGQWERKAVYTFYLELVRDLLHLSMYLCFFLLIFVYYG
LPLNLIREIYETFRNFKVRVADYIRYRKITSNMNERFPDATSEELDAGDATCIICREEMI
KAKKLLCGHLFHVHCLRSWLERQHTCPTCRALVVPPENGLAPTGGQHGVQPEIRPHGSGV
TGTSAQSSEGNAVDNDMSQHQARLQAAAAAASVYEKSFIYPPANTFLWTPAYALLPQTGM
LAFHGENTDPTIETTTSGQLQEHGDKSDPKILNMLGSQLQAQERFLWHQIEFHQSQLQLL
QQQTVEESKVAVAGVVSPAMPDGKGKTAAAGAASASVSDCGRHGEIEEANTN
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagttccgaacatacgcggggtttagcttggtgggtgcaatcaccattatttac
catgcattcagcagtcggggccagttctacccagccacagtctatctatcagcctccaag
attagtttggtggtgcttatgaacatgtgtttggtcatcatgtgcgctctttggcagtta
accaaattcttgtttcttgggtctctccgagaagtcgaagttgagaggttgaatgaacag
tcatggcgggaggttatggaaattatcttcacgctcacaatattcagacaagatttttca
gtcacatttcttgcgatggtcacagcccttctgttgattaaggcctggcactggatggtt
cagaagagggttgagtacattgagacgactccttcagttccaacattgtcccatgttcgg
attgtttcatttattgtgttccttcttgccctggattgtctcatcttctatggttctttt
aagtatctgatacagacgtggcggccatctgttgcactcttctttgccttcgagtacatg
atactagcaacaacaacgttgtcaacatttgcaaaatatgttttctatgtctgtgatatg
ctgatggaagggcagtgggagagaaaggcagtgtacaccttttacttggaacttgttcgc
gatctgcttcacttatctatgtatctttgtttcttcctattgatcttcgtgtactatggt
ctgccactgaacttaattcgagagatctatgagacattccgtaactttaaagttcgtgtt
gctgattatattcggtatcggaaaatcacctcaaatatgaatgagcgtttcccagatgca
acatctgaagaactcgacgcaggtgatgcaacatgcattatttgtcgtgaggagatgatc
aaagcaaaaaagctgctttgcggacaccttttccatgtgcattgtctgcggtcatggttg
gagcggcaacatacgtgcccaacttgcagagctttagttgttccccctgaaaatgggcta
gctcccactggtgggcaacacggagtgcaacctgagattcgtcctcacggatcaggtgtt
actggaacatctgcgcagagttctgaaggtaatgccgtggataatgatatgagccagcac
caagcccggctgcaagctgccgccgctgctgcttcagtatatgagaagtcatttatttat
ccgcctgcaaatacatttttatggaccccagcatatgctttgctacctcagactggtatg
ttggccttccatggagagaacacagatccaaccattgaaacaactacttctggacaattg
caagaacatggagataaaagtgatccaaagattttaaacatgttgggttctcaattgcaa
gctcaggaaagatttctctggcaccagattgagtttcaccaaagccagctgcaacttctg
cagcaacagacggtggaggaatcgaaggttgctgtcgctggggtggtgtcccctgccatg
ccagatggcaagggaaagactgcagcagctggtgctgcttctgcatctgtttctgactgt
ggtcgtcacggggagattgaagaagctaacacaaactaa
DBGET
integrated database retrieval system
