Magnolia sinica: 131233244
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Entry
131233244 CDS
T09699
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131233244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131233244
03012 Translation factors [BR:
msin03012
]
131233244
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131233244
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131233244
Translation factors [BR:
msin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131233244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
AAA_16
AAA_19
T2SSE
PhoH
ABC_tran
Motif
Other DBs
NCBI-GeneID:
131233244
NCBI-ProteinID:
XP_058085873
LinkDB
All DBs
Position
18:59770988..59915781
Genome browser
AA seq
1152 aa
AA seq
DB search
MHSGLGFLLKVGKSAATALSNHRWTAAVDMSPSLPRFSVFNGGDFRNVGRHGLCSSGYAV
EQFSDDEYECDFESHKASSSVANIDEWKWKLSLLLRSEEEQEIISRDKRDRRDYEQISNL
AKRMGLYSELYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEHLDRMQ
LNSEKVKDNLVENVAVNQIEDVNEDENQDSLLDASVMEKILQRKSSRMRNLQRAWQESPE
GVKMLTFRKSLPAYEEKERLLSAIARNQVVVISGETGCGKTTQLPQYILESEIESGRGAF
CSIICTQPRRISAMAVSERVSTERGENLGESVGYKVRLEGMKGKNTHLLFCTSGILLRRL
LGDRNLNGISHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNFFG
GAPTIHIPGFTYPVRAHFLEDILEMTGYKLTSFNQIDDYGQEKLWKTQRQLLTRKRKNQI
TSLVEDALNKSSFESYSSSARDSLACWTPDCIGFNLIEAVLCHICRKERPGAVLVFMTGW
DDISCLRDQLKAHPLLGDPNRVLLLSCHGSMATSEQKLIFEKPPPNVRKIVLATNMAEAS
ITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRKGRAGRVQPGECYHLYPR
CVYDAFAEYQLPELLRTPLNSLCLQIKSLQLGTIGEFLSAALQPPEPLAVENAVDFLKMI
GALDEKENLTNLGKYLSILPVDPKLGKMLIMAAVFRCLDPILTVVSGLSVRDPFLLPQDK
KDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRK
QFQFILKDADLLDADAGTCNNLSHNQSLVRAIICSGLFPGIASVVHREKSMSFKTMDDGQ
VLLYANSVNARYQTIVYPWLVFGEKVKVNSVFIRDSTGVSDSILILFGGALARGASAGHL
KMLDGYIDFFMDPSLAELYWNLKEELDKVIQKKLEEPGVDIHKVGKYLVHSVQELVSADQ
CEGRFVFGRESKKARASGEDGDSNSRLKDGSNPKSLLQTLLMRAGHSPPKYKTKHLKTNE
FRALVEFKGMQFVGKPKKNKQLAERDAAIEALGWLTHTSDKNRDEEDDSPPDVTDNMLKL
LGRRRRSKRRPG
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgcattcggggttagggtttctgctgaaggtcggcaagtcagcggcaaccgcactatcg
aatcacagatggacggctgccgtcgatatgtcaccgtctcttccacgattctcggtcttc
aatggaggagatttcaggaacgtaggaaggcatggtctctgcagcagcggatatgccgtt
gagcagttctcggacgatgagtacgagtgcgattttgagagtcacaaggcatcttcgtcg
gtagccaacattgatgaatggaaatggaaacttagcttacttttacgcagcgaagaagag
caagaaataatttctagagataaaagagatcggcgtgactatgagcaaatctccaacctc
gccaaaaggatgggactttacagtgaactgtatgggaaagtagtagttgcaagcaaggtt
cctctgcctaattacagacctgatcttgatgataaaaggccacaaagagaggttgtgatc
ccacttagcttacaaaggagagttgaaggtctacttcaggaacaccttgatcgaatgcag
ttaaattctgaaaaggtcaaagataatttggttgaaaatgtggctgtcaatcaaattgaa
gatgtaaacgaggatgaaaatcaggattctttgcttgatgcatcggtcatggaaaagatt
ctacagagaaagagttcacgtatgcgtaatttgcagagagcttggcaggagtcacctgag
ggtgtgaagatgctaactttcaggaaatccctccctgcttacgaggagaaggagaggctg
ctctcagcaattgcacggaatcaggttgtagtcatttcaggggagactggatgtggcaaa
actactcaacttcctcaatatattttagaatctgaaatagaatctggtcgtggagcattc
tgcagcatcatctgtacacaacctcgaagaatatctgccatggctgtttcagaaagagtt
tctacagaaagaggagagaatctgggagaatcggtgggttacaaagttcggttagaggga
atgaaaggaaaaaacacgcatctgcttttctgtaccagcggcattttgctaaggaggttg
ctgggagaccgtaatctgaatggtataagccatgtttttgttgatgaaattcatgagcga
ggcatgaatgaagacttcttattaattgtgctgaaggatcttcttcctcgtcgccgggat
ctgagattgattttgatgagtgcaactcttaatgctgagttattttcaaactttttcgga
ggagcaccaacaattcatattccgggattcacataccctgtaagggcacatttcctggaa
gatatattggaaatgactggatataagttgacttccttcaatcagattgatgactatggc
caagaaaaattgtggaaaactcagaggcagctattaacgcggaagagaaaaaatcagatt
acttcacttgttgaggatgctcttaacaagtcaagctttgaaagttatagttccagtgca
cgcgattctctagcttgttggactcctgattgcataggatttaatcttattgaagctgtt
ttatgccatatatgtcggaaggaaagaccgggtgcagtgttagtattcatgacaggctgg
gatgatattagctgcttgagggatcagctcaaggcacatcccctcttaggagatccaaac
agggttctcctcctttcatgccatggctcaatggctacatctgaacagaagctcatattt
gagaagcctcctccgaatgtacgcaaaatagttcttgctacaaacatggcagaggcaagc
attacaatcaatgatattgtttttgtagttgattgtggaaaagcaaaggagactacgtat
gatgcgttaaacaatacaccctgtttgttaccatcctggatatcacaggcttctgcccgc
caaagaaaaggtagagcgggccgtgtgcagccaggagagtgttatcacctatatcctaga
tgtgtatatgatgcttttgcagaataccagcttcctgaacttctgaggactcccttgaac
tctctctgcttgcaaatcaaaagtttgcaactcggaactataggagagttcttgtcagct
gctctgcaaccaccagaaccattggctgtcgaaaatgcagttgatttcctgaagatgatt
ggagcattagatgagaaggagaacctaacaaatcttggaaaatacctgtcaatacttccg
gtggatccgaagctaggcaagatgcttatcatggctgctgttttccgctgtcttgatcct
attcttacagtagtgtccggactgagtgttagggatccttttttgttacctcaagacaaa
aaggatctagcagggacggcaaaatcaagattctctgcaaaggactacagtgatcatatg
gctcttgttcgtgcatatgaaggatggaaagatgctgaaagagaaggctcagcctatgaa
tattgctggaggaatttcctttcagcccagactctgcaagctatccattcccttaggaag
caatttcagttcatcttaaaagacgctgatttattagacgcagatgctggcacttgtaat
aatttgagccacaaccagtcattggttcgtgccatcatctgttccgggctctttcctggc
atagcatctgttgtgcaccgagagaagtctatgtctttcaagacaatggatgatggacag
gttctactatatgcgaattccgtgaatgcacgctatcagacaattgtctacccatggctg
gttttcggtgagaaagtcaaagtcaattcagtattcatacgagactctacaggtgtctct
gattcaattcttatcctttttggaggtgctcttgcccgtggagcttcggccgggcacttg
aaaatgttggatggctacattgatttcttcatggatcctagtttggcagaattgtattgg
aatctcaaggaggaacttgacaaagttatccaaaagaagcttgaagagccaggcgtggac
attcacaaggttggcaagtaccttgtgcattcggtgcaggaactggtatcagccgaccaa
tgtgaggggcggtttgtttttggccgtgaaagcaagaaggcccgagcctccggtgaagat
ggtgatagtaacagtagattgaaggatggttcaaacccaaaaagcttgctccagaccctg
ttgatgagggcgggccatagccccccaaagtacaaaacaaaacacctcaagacaaatgag
ttcagggcgcttgtggagttcaaagggatgcagttcgtagggaagcccaagaagaacaag
cagcttgctgagagggatgctgccattgaggcattgggctggctgacccacacctccgat
aagaacagggatgaagaggatgactccccgcctgatgtcactgataacatgctgaagttg
cttgggcggcgtcggcgttccaagcgccggccaggttga
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integrated database retrieval system
