Magnolia sinica: 131235478
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Entry
131235478 CDS
T09699
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131235478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131235478
03012 Translation factors [BR:
msin03012
]
131235478
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131235478
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131235478
Translation factors [BR:
msin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131235478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
AAA_16
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
131235478
NCBI-ProteinID:
XP_058088648
LinkDB
All DBs
Position
19:7165149..7189341
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AA seq
1223 aa
AA seq
DB search
MSLSPTVLKYTLSPNPRNPRNSLSSSPKTATAMKDLPARHGSYCVPQRRLSSVVVAASSA
AAVPSTGGASPTRSVDFDWPDQRDGPASEPRNDPYPMLLDQQSLQYSRWGSDGYSDDDSD
HEMEPSMSKPFQGASTLENVDEWKWKLNVLIRKNDEQEIVSRERKDRRDFDNLAALATKM
GLYSHHYGRVVVISKVPLPNYRSDLDEKRPQREVSIPASLYRRVDDLLEEHLSRRPLNRE
SLPDATFSRSSSNGSIGADEGLFEPPEPYSVVMEKLQRRKSLQLRDQQIDWQESPEGQKM
QEFRRSLPSYKERGALLTAISQNQVVVISGETGCGKTTQIPQYILESEIEAVRGAVCSII
CTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGVKGRDTRLLFCTTGVLLRRLLVDR
NLKGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLVLMSATLNAELFSSYFGGAPM
IHIQGFTYPVQTHFLEDVLEITGYRLTPYNQTDDYGQEKSWKMQKQALRKRKSQIASVVE
DALEAADLKGYKQNTRESLSCWNPDSIGFNLIEDVLCHICKQERPGAILVFMTGWDDISA
LKDQLQANPLLGDPRKVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNIAETSITIND
VVFVIDCGKAKETSYDALNNTPCLLPSWISKASARQRQGRAGRVRAGECYRLYPRCVYDA
FAEFQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQSPEPLSVQNAVEYLKIIGALDE
KENLTVLGRLLSTLPVEPKLGKMLILGAIFNCLDPVLTVVSGLSVRDPFLMPLDKKDLAE
SAKSQFSAQDYSDHLALVRAYEGWKEAEREQNGYDFCWKNFLSLQTLKAMDSLRKQFLTL
LADTGLVDDFSGTHNMWSHDEHLIRAIICAGLYPGISSVVKKEKPISLKTMEDGQVMLCS
NSVNAREQRIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGGISRGAFDGHLKMLGG
YLEFFMRPAVADMYLKLKRELEEIIQNKLLNPKMDIHVNEQLLSAMRLLVSEDPCDGRFV
FGRQVLINRQVRSRPELNRPELGQPELRPMKPFVKFSKNGDGSGDGPGGDNSKSQLQTLL
TRAGHETPRYNTKQLMNNQFRTTVEFNGMQFIGQPCHNKKLAEKDAASAALQWLTGGTTP
RHEDIDNMSMMLKKSKNKQHRRF
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgtccttgagccctaccgtccttaaatacaccctctctccaaaccctagaaaccctaga
aattctctctcatcctctcccaaaaccgccaccgccatgaaggatctcccggcgcgccac
ggctcttactgcgtcccacagcgccggctctcctccgtcgtcgtcgcggcttcctccgcc
gccgccgtgccttccaccggtggcgcctcgccgacccggtctgttgacttcgactggcct
gatcaacgggatggccctgcgtcggagcctcggaatgatccgtaccctatgctgttggat
caacagagcttgcagtatagccgatgggggtctgatggttactcggacgacgattctgat
catgaaatggagccttcaatgagcaagccttttcagggtgcatccacacttgagaacgtt
gatgagtggaagtggaagttaaacgtgcttattcgcaaaaatgatgagcaagagatagtg
tcaagggagagaaaagataggcgtgattttgataatctcgcagcattggccactaaaatg
ggtttgtatagtcatcactatggaagggttgttgttattagtaaggtcccactgccaaac
tacagatctgacctggatgaaaagcgtcctcaaagagaggtaagcatccctgccagtttg
taccgaagagtggatgatttacttgaagaacacctttcacgaaggcctcttaatagggaa
agtcttccggatgccaccttttcaagatcaagcagcaatggcagtattggtgctgatgaa
gggctctttgagcctcctgaaccttatagtgttgtcatggagaaacttcaacggcgaaaa
agtttgcagctgcgcgatcaacagatagattggcaggaatctccggaaggacaaaaaatg
caagaatttcgcagaagtctgccttcttacaaagaaaggggtgcactattaacagccatt
tcacaaaatcaggttgttgtcatctcaggtgaaactggttgtggtaagacaacacagatt
cctcagtatatcttagaatctgaaatagaagccgtccgtggagcagtgtgtagtatcatt
tgtactcaacctaggcgaatatctgctatggctgtctctgaaagagttgctgctgagaga
ggggagaagttgggagaatctgttggttataaagttcgcctcgagggtgtaaaaggcagg
gatactcgccttctcttttgcaccactggtgttttgttgaggagattactggttgatagg
aatctgaaaggtgtaactcatgttattgtggatgaaatccacgagcgtgggatgaatgaa
gatttcttgcttatcgtcctaaaagaactccttcctcgacggcccgaactgaggcttgtt
ttgatgagtgcaaccctcaatgctgagctgttctcatcctactttggtggagctccaatg
atacatatccaaggtttcacatatccggttcaaactcattttctggaggatgttctggaa
attactggctataggttgactccatacaatcaaactgatgattacgggcaagaaaagtcc
tggaaaatgcagaaacaagctctcagaaagagaaagagccaaattgcttctgttgttgag
gatgcactggaggctgctgatttgaaggggtataaacagaatactcgggagtctttgtcc
tgttggaatcctgattccattggttttaacctcatagaagatgttttgtgccatatatgt
aaacaagaaagacctggtgctattttggtatttatgactgggtgggatgacataagtgct
ctgaaggatcagctccaggccaatcctcttttaggagatccaagaaaagtcttgttgctt
gcatgtcatggttctatggccagctcagagcagaggttaatatttgataagcctgaagat
ggagtgcgaaagatagtgcttgctaccaacatcgctgagacaagtattactattaatgat
gtggtttttgtcattgattgcggaaaggcaaaagagacatcatatgatgcattaaacaat
accccttgtctgcttccttcatggatctctaaggcttctgctcgacaaagacaaggaaga
gctggccgtgttcgagctggtgaatgttaccgtctctatcccagatgtgtttatgatgca
ttcgcggaattccaactgccagaacttttaaggacacctttacaatcactttgcctgcaa
attaagagtctacagcttggaagcatttctgagttcttatccagggctttgcaatcacca
gaaccattatcagttcaaaatgctgttgagtatctgaaaataattggggctctggatgag
aaggaaaatttgactgtgctaggacgcctcttgtcaacacttccagtggagcccaaactt
ggaaagatgctcatattaggggctatattcaattgccttgatccagtattaactgttgtt
tctggtttgagtgtgagagatccatttttaatgccattagacaagaaggatcttgcagaa
tctgcaaaatcgcagttttccgcccaagactatagcgaccatcttgcgctggtccgagcc
tatgagggttggaaagaagctgaaagggagcaaaatggatatgatttctgctggaagaat
ttcctctccctgcaaacattgaaagctatggattcacttcggaagcaattccttactctg
ctcgcggacactggtctggtcgatgacttctctggcacacacaatatgtggagccatgat
gaacacttaatccgagcaatcatatgtgccggtctgtatcctggaatttcatcagttgtg
aaaaaggagaagccaatatcattaaagacaatggaggatggtcaggtcatgctttgctct
aactcggtcaacgctcgagaacaaagaattccatatccgtggttagttttcaatgagaag
gtgaaagtgaattctgtgttccttcgagattcaacaggagtatctgattctgtactacta
ctatttgggggaggcatttcgcgaggggcattcgatggacatttaaaaatgttaggggga
tatttggagttctttatgagaccggctgtagctgacatgtatctgaaactgaagagagag
cttgaggaaataatacaaaacaaacttctaaatcccaaaatggacatccacgtcaacgaa
cagctcctgtctgccatgcgtttgcttgtttcagaggacccatgtgatggcaggtttgtc
ttcgggcggcaagtgctaataaaccggcaggtgcggagccgcccagaactaaaccgcccg
gaactaggccagccagagctaagacccatgaaaccatttgtgaagttctcgaaaaatggt
gatggaagtggcgatggtcccgggggtgacaactccaagagccagttgcaaacgctgctc
acgagagctgggcatgaaacaccaaggtacaacacgaaacagcttatgaacaaccaattc
cggacaacggtcgagttcaatgggatgcagttcattgggcaaccatgccacaacaagaag
ctcgctgagaaggatgcagcatctgctgcactgcagtggctaactggtgggaccacgcca
cgtcatgaggacatagacaatatgtctatgatgctgaagaaaagcaagaacaaacagcac
aggaggttctaa
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integrated database retrieval system
