Magnolia sinica: 131235555
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Entry
131235555 CDS
T09699
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
msin
Magnolia sinica
Pathway
msin03420
Nucleotide excision repair
msin04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
131235555
09124 Replication and repair
03420 Nucleotide excision repair
131235555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msin04121
]
131235555
03400 DNA repair and recombination proteins [BR:
msin03400
]
131235555
Ubiquitin system [BR:
msin04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
131235555
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
131235555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_EML
ANAPC4_WD40
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_TEP1_C
NBCH_WD40
WD40_RFWD3
WD_LRWD1
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_WDR75_2nd
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
131235555
NCBI-ProteinID:
XP_058088742
LinkDB
All DBs
Position
19:complement(29642167..29660482)
Genome browser
AA seq
450 aa
AA seq
DB search
MWKEVGHREKGRIRPQSFANRIRSKRVAAIELSNRKEIVSPHRGAVNTLQVDLTEGRYLL
SGASDGSAAAFDVQRATGYEGGGLVAKHKPLFVIDKQHQQGHKYAISSVVWYPIDTGLFI
TASFDHCINVWDTNTTQVVMNFKMPGKVHGTAMSSLAASHMLIAAGTEDVQVRLCDIASG
AFTHTLSGHRDGVMAVEWSTSSEWVLMTGGCDGAIRFWDIRRAGCFRVLDQSLSQLGRRP
PLLEKTPKKGLASQSSLASQSSSVKARIPQKRTGFGSSSKHFPTLFKGQSQSKGHPGLMS
NRDRATAHYGAVTGLKATPDGMYLLSSGSDSRIRLWDIESGCNTLVNFEATRLQTSKGIQ
LAVAGDSSLVFVPCISTVKAFDVWSGRTSRTFRGHYECVNCCWFSSQDQELYTGSNDRQI
LVWSPSCLDAELEGAVEGQMLSSDCDNWSD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggaggtgggccatcgagaaaaggggaggatccgtccccaatccttcgccaat
cgcatccgttcaaaacgtgtggccgctatcgagctttccaaccgcaaggaaatcgtcagc
cctcacagaggcgctgtcaacactctccaggttgatttgacggaggggcgatatctatta
tctggtgcatctgatggatctgctgctgcgttcgatgttcaacgtgccacaggttatgag
ggaggtggcctggttgcaaagcacaaacctctctttgtcattgacaagcaacaccagcag
ggacataaatatgccatatcgtctgttgtttggtatcccatcgacacaggtcttttcatt
acagcttcatttgaccattgcatcaatgtctgggatacaaatacaactcaagtggtaatg
aatttcaaaatgccaggaaaagttcatgggacagccatgtcttcacttgctgcatctcac
atgctaattgctgctggaactgaagatgttcaggttcgtctgtgcgatattgcttctggg
gcattcactcatacgttgtctggtcaccgtgatggagtaatggctgttgaatggtctaca
tctagtgagtgggttttgatgactggggggtgtgacggcgcaattcgtttctgggacatt
cgacgtgctggttgttttcgtgttttagatcagtctctatctcaacttgggagacggcca
cctcttctcgagaaaactccaaaaaaagggcttgcatcacagtcgtcgctagcaagccag
tcttcttctgtaaaggccaggataccacagaaaagaacgggttttggcagcagttccaaa
catttcccaaccctcttcaaaggtcaaagtcaatccaagggacaccccgggttgatgtcc
aatcgtgaccgtgcaacagctcattatggtgctgtgactgggctgaaagcaacaccagat
ggcatgtatttgcttagttcaggatcggattcaagaataaggttgtgggatattgaatct
ggttgcaacacattggtgaattttgaagccacacggctgcaaactagcaaaggaatacag
cttgctgttgctggagactcatcactcgtttttgttccatgtatatctactgtcaaggca
tttgatgtgtggtctggtaggacgtcccgcacatttcgcggccactatgaatgtgttaac
tgttgctggtttagttcacaggatcaggagttgtacacagggagcaatgacagacagatt
cttgtctggtctccatcctgtttggatgcagaactggaaggagcagtggaaggacagatg
ttatcgtcagactgtgataactggagcgactga
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