Magnolia sinica: 131235632
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Entry
131235632 CDS
T09699
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
msin
Magnolia sinica
Pathway
msin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131235632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msin03041
]
131235632
03009 Ribosome biogenesis [BR:
msin03009
]
131235632
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131235632
Spliceosome [BR:
msin03041
]
Complex A
U1 snRNP components
U1 related factors
131235632
Complex B
131235632
Ribosome biogenesis [BR:
msin03009
]
Eukaryotic type
Pre-60S particles
Helicases
131235632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
131235632
NCBI-ProteinID:
XP_058088877
LinkDB
All DBs
Position
19:complement(3286871..3299258)
Genome browser
AA seq
771 aa
AA seq
DB search
MAITASASSTGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPVTNVTQYERPVATPLPGPL
PVPKSATIPVSSSVQIQQSSGSSAPGQKHQKSKEENDQYGGSNHDSGDRQGTRDSVSYSQ
NAPSVSLNAGHGVANVHNHGSDVQPLGSSAGVHGAFDVGGASSAESYRRKHEITVRGDDV
PAPFMTFQATGFPQEILREAQHAGFSAPTPIQAQSWPIALKGRDIVAVAKTGSGKTLGYL
IPGFIHLKRRCNKSQMGPTVLVLSPTRELATQIQDEAAKFGKSSRISCTCLYGGAPKGPQ
LRDLERGTDVVVATPGRLNDILEMRRVSLQQVSYLVLDEADRMLDMGFEPQIRKIVKEIP
ARRQTLMYTATWPKEVRKIAADLLVNPIQVNIGNIDELVANKSITQYVEVMTSMEKQRRL
EQILRSQEPGSKVIIFCSTKKMCDQLSRTLTRQFGAAAIHGDKSQGERDWVLSQFRTGKS
PVLVATDVAARGLDVKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGLAYTFFSDKDAKH
APDLIKVLKGVGQQVPQELLNMASQCGGGMSRFRRWGSGPGGGDGGRSYGAGRNDSGYGS
RGGRDPPSSGWSERGHGQNDWEPQNRYDGGYNDGRLETHGGRDGTYAGGSNDQGAGDNCT
GCSFSPRPKSGSGWVDCRRSRSRSRSVDRYGGGPPSPSRTDASPPAPGPAGPDRLPSPQQ
WRSSYEGENVEDEPQPEHDEPQPEHGGEQGFIEQEEEGMIPADEDAVILID
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggctatcactgcatctgcttcctccactggcccccgttatgcaccaccagacccaaca
cttcccaagccatggagaggtctggtcgatgggaaaactggttatctgtatttctggaat
ccggtaacaaacgtaactcaatatgagaggcctgttgctaccccgcttccaggcccactg
cctgttccgaagtctgctacaatacccgtaagttcttcagttcaaattcagcagtcgtca
ggttcctctgctccaggacagaaacatcagaaatctaaagaggaaaatgaccaatatggt
ggaagcaaccatgattcaggagatcgtcagggtacgagggatagtgtttcctactcgcag
aatgccccaagtgtttctctcaatgctgggcatggtgtggctaacgtgcataatcatggg
tctgatgtgcagcccttgggatcatctgctggagtgcatggggcctttgatgtgggaggt
gcttcatctgctgaatcctatcgccgtaaacatgaaataactgttaggggagatgacgtt
ccagcaccattcatgacatttcaagccactggtttcccacaagaaattcttagagaggct
caacatgctgggttttctgctccaaccccaattcaggcccagtcatggccaattgcttta
aagggccgtgacattgtggccgttgcaaagactggttcaggcaaaaccttgggttatctt
atcccggggtttattcatctcaagcgtcgttgcaacaaatctcagatgggtccaacagtg
ttggttctttcaccaacaagggagttggcaacacagatacaagatgaagctgcaaaattt
ggcaagtcctcaagaatttcatgcacgtgtttatatggaggagctccgaaaggtcctcag
cttagagatctagagcgaggaacagatgttgtggttgcaactccagggcggttgaatgat
attctagagatgcgaagagtcagcctgcagcaagtctcatacctggttcttgatgaggca
gaccgcatgctggatatgggttttgagcctcaaatacggaagattgtgaaagagatacct
gcacgccgccagactctcatgtatacggcaacgtggccaaaggaggtccgtaaaattgct
gctgatctattggtcaacccgattcaagttaacatcggcaacatagatgagcttgttgca
aacaagtctatcactcagtatgttgaagtgatgacatctatggagaagcagagacggttg
gaacagatcttgcgatcccaagaaccaggttccaaagtcatcattttctgctccacaaag
aagatgtgtgaccagctgtctcgcaccctaacccgccagtttggagcggctgccattcat
ggcgacaaatctcagggtgagagggattgggttttgagccaattccgcactgggaaatct
cctgtacttgtggctactgatgttgcagctcgaggactggacgttaaagacatacgggtg
gttatcaactatgacttcccaacaggcattgaggactatgttcacaggattggaaggact
ggaagggcaggtgccacaggtttggcatacaccttcttctctgacaaggatgctaagcac
gcaccagatctcatcaaggtccttaaaggggtgggtcagcaagttcctcaagagctactc
aacatggcttcacaatgtggcggcggaatgagcagatttcgtcggtggggttctggccct
gggggtggtgatggaggcaggtcatatggtgctggacggaatgattccggttacggcagc
aggggcggacgggatcctccgtcttctggctggtcagagagaggccatggtcaaaatgat
tgggagcctcagaacaggtatgatggaggctacaatgatgggcggttggagacacatggt
gggcgtgatgggacatacgctggcggtagcaatgaccagggagctggagataactgcaca
ggctgcagctttagcccgagaccaaagagcggaagcgggtgggttgactgcaggcggagc
agaagccgcagccgtagtgttgacaggtatggtggtggcccaccatccccatcgaggaca
gatgcttcgccgcctgctccgggaccagcaggcccggatcgtttaccatcaccacagcag
tggaggtcgtcatatgagggtgagaatgtggaggatgaacctcagccggagcatgatgaa
cctcagccggagcatggaggggaacaaggcttcatcgagcaggaagaagagggcatgatt
cctgcagatgaagatgcggtgattctaatagattag
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