Magnolia sinica: 131236449
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Entry
131236449 CDS
T09699
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4 isoform X1
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
msin
Magnolia sinica
Pathway
msin03022
Basal transcription factors
msin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131236449
09124 Replication and repair
03420 Nucleotide excision repair
131236449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msin03021
]
131236449
03400 DNA repair and recombination proteins [BR:
msin03400
]
131236449
Transcription machinery [BR:
msin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
131236449
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
131236449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
131236449
NCBI-ProteinID:
XP_058089601
LinkDB
All DBs
Position
2:complement(16756528..16765550)
Genome browser
AA seq
401 aa
AA seq
DB search
MRAAPHKLKGFRNTFTRFPLMLLLAAFGLIYRMYGSNIGSIDGRTGFTHTTRWAPQSLVD
LDDSAPSTPATPGKSLATVLVTPPSKPQHSPQIIPFMAPAPSKLYSDDVSLLVVALDTNP
FFWGGASSNPNTPSLSFSRFLNHLLPFLNSIILLHQLNQVVVIATGVNSCDYIYDSSSPP
MTSAASESRNMPSVCSAVLQNLEDFLIRDRQIGKDELAAGNGSSLLSGSLSLALCYIQRV
FRAGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMIPIDSCVVGIQHSAFLQQASY
ITGGVYLKPQHLDGLFQYLSMVFATDLQSRSFLQLPKPVGVDFRASCFCHKKTIDMGYIC
SVCLSIYCKHHKKCSTCGSVFNQANPDLNSTPDRKRKAPES
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgcgggctgcaccgcacaagctcaaaggttttaggaacacttttacacgattcccgttg
atgttgctcctagcagcattcgggctgatttatcgcatgtacggttcaaatattggttcc
attgatggacggactggatttacacatacaacacggtgggccccacagagcctggttgat
ttagacgattccgctccttctacaccagcgaccccaggcaagtcgctcgcaaccgtcctt
gtaacgccacccagcaaaccccagcactctccgcaaatcattcctttcatggcaccggct
ccatcaaagctctactccgacgatgtcagccttctcgtcgttgcgctcgacaccaaccct
ttcttctggggaggagcatcgtcaaaccccaacacaccctctctctccttctccagattc
ctcaatcaccttctccctttcctcaattccattattctcctccaccaactcaaccaagtc
gttgtgattgccactggcgtcaattcctgcgactacatctacgactcctcgtcgccgcca
atgacatccgccgcctctgagagcaggaacatgcctagcgtctgctcggcagtcctgcag
aatctggaggatttcttgatcagagatcgacagattgggaaggatgaattggcagctggg
aatgggtcttcgcttctttctggatcgctgtcgctggctctttgttatatacagagggtt
ttccgagctgggccacttcatccgcagccccgaatcttatgcttacagggatctccagat
gggccagaacaatatgttgctgtaatgaatgcaatattctcagctcaacgttccatgatt
cctatagattcatgtgttgtcggcattcaacactctgccttccttcaacaggcctcgtac
ataacagggggtgtttatctgaagccccaacatttagatgggttgtttcaatatctttcg
atggtatttgcaacagatttgcagtcccgaagttttctacaacttccaaagcctgtaggg
gtggacttccgtgcctcatgcttttgccataaaaagaccatcgacatgggctacatttgt
tcagtttgtttgtctatatactgcaaacaccacaagaaatgttccacctgtggatctgtt
ttcaatcaggcaaatcctgaccttaactcgactccggacagaaaaagaaaggctccggaa
tcttaa
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