Magnolia sinica: 131236564
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Entry
131236564 CDS
T09699
Name
(RefSeq) DNA polymerase delta catalytic subunit isoform X1
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
msin
Magnolia sinica
Pathway
msin03030
DNA replication
msin03410
Base excision repair
msin03420
Nucleotide excision repair
msin03430
Mismatch repair
msin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131236564
03410 Base excision repair
131236564
03420 Nucleotide excision repair
131236564
03430 Mismatch repair
131236564
03440 Homologous recombination
131236564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msin03032
]
131236564
03400 DNA repair and recombination proteins [BR:
msin03400
]
131236564
Enzymes [BR:
msin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
131236564
DNA replication proteins [BR:
msin03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
131236564
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
131236564
MMR (mismatch excision repair)
DNA polymerase delta complex
131236564
BRITE hierarchy
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
divDNApol
Motif
Other DBs
NCBI-GeneID:
131236564
NCBI-ProteinID:
XP_058089812
LinkDB
All DBs
Position
2:20372046..20394973
Genome browser
AA seq
1097 aa
AA seq
DB search
MQNGSSSKRRAPPPPSAPNASKRFQPQQQQQRPQSTVTMAEDEEMMDEDVYLEETLLQDE
EFLHDEEALRALSSRLSKWKRPPLPPSYVSQSQSIIFQQLEIDYVIGDSHKVLLPNSSGP
AAILRMFGVTKEGHSVCCHVHGFEPYFYISCLPGMDPDDISRFHQILEGRMREANRNSKA
PKFILRIQMVQKRSIMHYQQQQSQPFLKIVVALPTMVASCRGILERGIQIDGLGTKSFVT
YESNVLFALRFMIDCNIVGGNWIEVPARKYMKATKSISYCQLEFDCLYSELVSHAPEGEF
SKMAPFRILSFDIECAGRKGLFPEPSHDPVIQVANLVTLQGEDHPFVRNVMTLKSCSPIV
GVDVMSFNTERDVLLAWRDFIREIDPDIIIGYNICKFDLPYLIERAEALKIAEFPILGRI
RNSRVRIKDTTFSSRQLGVRESKEVTIEGRVQFDLFQVMQRDYKLSSYSLNSVSAHFLAE
QKEDVHHSIISDLQNGNPETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPIS
FLLARGQSIKVLSQLLRKSKQKNLVIPNVKGQGSGHETFEGATVLEARAGFYEKPIATLD
FASLYPSIMMAYNLCYCTLVTPEDVRKFNLPPECVNKTPSGETFVKPNLQKGILPEILEE
LLAARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTS
YGRQMIEQTKKLVEDKFTTLGGYDHNAEVVYGDTDSVMVQFGVSTVDAAMSLGREAAQYI
SGTFTKPIKLEFEKVYYPYLLISKKRYAGLLWTNPEKFDKMDTKGIETVRRDNCLLVKNL
VTECLHKILIDQDVPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGDDYAVKTAHVEL
AERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIFVLENNIPIDPHYYLENQIS
KPLLRIFDPILKNAEKELLHGSHTRSVSISTPSNSGIMKFAKKQLCCIGCKALISNADQT
LCSHCKGREAELYCKTVASVSDLEKLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKK
AQKDMAEAKLQLDRWKF
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacggcagcagcagcaagaggcgagctcctccgcctccttcggccccgaacgcc
tcgaagcgattccagccccagcagcaacagcagcgtccgcagtcgacggtgacgatggcg
gaagatgaggagatgatggacgaagacgtctacttggaagaaaccctactccaagacgaa
gaattcctccacgatgaagaagccttacgagccctctcatcccgactctccaaatggaag
cgtcctcccctccccccttcctatgtctcccaatcccaaagcataattttccagcaattg
gagatagattacgttattggcgatagccataaagtattgctccctaattcgtcgggccct
gctgccatccttagaatgtttggtgttacaaaggaaggccacagcgtctgctgccatgtt
catgggttcgagccgtatttctacattagctgcctgcccgggatggaccccgatgatatc
tcccgtttccaccaaatccttgagggtagaatgagggaagcaaacaggaacagcaaggct
cccaaattcatcttaagaattcagatggtccagaagagaagcattatgcattaccagcaa
cagcaatctcagcctttccttaagattgttgttgccctgccaacaatggttgccagctgt
cgaggcattctagagaggggcatacaaattgacggtcttggaacaaagagtttcgtgaca
tatgaaagcaatgttctttttgcccttcgtttcatgattgattgtaacatcgttggtggc
aattggattgaagtgcctgctaggaaatatatgaaggcaacaaagagtatatcttattgc
caactagaatttgattgtctgtactctgaattagtcagccatgctccagaaggagagttc
tctaaaatggccccttttcggattttgagtttcgacattgagtgcgctggtcgcaaagga
ctttttcctgagccaagccatgatcctgttattcaggtggccaatttagttactctacag
ggagaggaccacccctttgtacgcaatgtaatgactcttaagtcatgctctccaatagtt
ggtgtcgatgtgatgtcatttaatactgaaagagatgtcttgctagcttggagggatttt
atccgtgaaatagatcctgatatcataatcggatacaatatctgcaagtttgatctgcca
tatcttattgagagagctgaagccttgaaaatagctgaatttccaattctgggacgcatc
agaaacagtagggttcggatcaaggatacaactttttcatcaagacagcttggagtgcgg
gaaagtaaagaggttacaatcgaagggcgagttcagtttgatctgtttcaggttatgcaa
cgagactataagctgagttcatattctttgaattctgtttctgcacactttctcgcagag
cagaaggaggatgttcatcattcaataatatctgatcttcaaaatggtaacccagaaact
aggaggcgtcttgctgtctattgcttgaaggatgcttatcttccacaacggcttttggac
aaattgatgttcatttacaactatgtggagatggctcgagtcacaggtgttcctatatct
tttctgcttgcaagaggccaaagcattaaggttctttcacaacttcttaggaagtccaag
cagaagaaccttgttattccaaatgttaaagggcaaggaagtggacacgaaacatttgag
ggtgcaactgttttggaggccagagctggattttatgaaaagccaattgctacattggat
tttgcatctttgtatccgtccatcatgatggcatataatctatgttactgcactctggta
acacctgaggatgttcgtaagttcaacttgcccccagaatgtgtcaataaaactccatct
ggtgaaacttttgttaaaccaaatttacagaagggcatacttccagaaattctcgaagaa
ttattggctgctcgtaaaagggctaaagcagatcttaaggaagcaaaggatccatttgag
aaggctgtactggatggtcgtcagctggctctgaaaataagtgcgaactcagtgtatgga
tttactggagctacagtgggacaactaccttgtttggagatatcttccagtgtgacaagc
tatggtcgacagatgattgagcagacgaagaagcttgtagaagacaaattcacaacgctt
ggtggctatgatcacaacgccgaggttgtttatggggatacagattctgttatggttcaa
tttggtgtgtcaactgtagatgcagcaatgagcctggggagggaagcagctcagtacatc
agcggcactttcacaaagcccatcaaactagagtttgagaaggtttattatccatacctt
ttaatcagcaagaagagatatgctggacttttgtggacaaatccagaaaagtttgacaaa
atggacaccaaaggcattgagacagttagaagggacaactgtcttctggtaaagaatttg
gtaactgaatgccttcataagattctaattgatcaagatgttcctggtgcagtccagtat
gtcaagaacaccatttcagatcttctgatgaaccgcatggatttgtcgcttctggttatc
actaagggtctcacaaaaacaggggatgattatgcagtaaagacggcacatgttgaactt
gctgaacgcatgcgcaagcgggatgctgccactgctccaaatgttggggatcgtgttccg
tatgttattattaaagctgcaaaaggtgccaaggcttatgaaaggtcggaggatcctatc
ttcgtgctagagaataacattccaatagatccccattactaccttgaaaatcaaattagc
aagccgcttttgagaatatttgatcccattctgaagaatgcggaaaaggaacttctccat
ggcagccacacaagatcagtttccatttcaactccttcaaacagcggtatcatgaagttt
gcaaagaaacaactttgttgcattggctgcaaagctctaatcagtaatgcagatcaaaca
ctctgttcacactgcaagggaagagaggctgaactatattgcaaaaccgtagctagtgtg
tctgatttagaaaagctttttgggaggctgtggacgcagtgccaggagtgccaaggctct
cttcaccaagacgtcctctgtacaagtcgggattgcccaatattttatcggaggaagaag
gcacagaaggacatggctgaagctaagttgcaactggatcggtggaaattctga
DBGET
integrated database retrieval system
