Magnolia sinica: 131236855
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Entry
131236855 CDS
T09699
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
msin
Magnolia sinica
Pathway
msin03013
Nucleocytoplasmic transport
msin03015
mRNA surveillance pathway
msin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131236855
09122 Translation
03013 Nucleocytoplasmic transport
131236855
03015 mRNA surveillance pathway
131236855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131236855
03041 Spliceosome [BR:
msin03041
]
131236855
03009 Ribosome biogenesis [BR:
msin03009
]
131236855
03012 Translation factors [BR:
msin03012
]
131236855
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131236855
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
131236855
mRNA cycle factors
Stress granule specific factors
131236855
Spliceosome [BR:
msin03041
]
Complex C
Other components
EJC/TREX
131236855
Ribosome biogenesis [BR:
msin03009
]
Eukaryotic type
90S particles
Helicases
131236855
Translation factors [BR:
msin03012
]
Eukaryotic type
Initiation factors
eIF-4
131236855
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
NAT10_TcmA_helicase
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
131236855
NCBI-ProteinID:
XP_058090325
LinkDB
All DBs
Position
2:30050652..30067527
Genome browser
AA seq
415 aa
AA seq
DB search
MAAAATATTSVVLRNRNGPGRTAPADDDSTVFETSPGVEAITSFDQMGIRDDLLRGIYAY
GFEKPSAIQQRAVMPIINGRDVIAQAQSGTGKTSMIALTVCQMIDTASREVQVLILSPTR
ELASQTEKVILAIGDYINVQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVCDMIKRRTL
RTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITNKFMTDP
VRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEK
MRSYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPN
NRELYIHRIGRSGRFGRKGVAINFVRSDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagctgcgacagcaactacttcggtggtcctgcggaacaggaacgggccaggt
aggaccgctccggcagacgatgacagcacggtgttcgagacgagccccggcgtggaggcc
atcacaagcttcgaccagatgggcatccgagacgatctcctgcgcggtatctatgcctac
ggcttcgagaagccctccgccatccagcagagggccgtcatgcccatcatcaatggccgt
gatgtcatcgcccaggcccagtccggtaccggcaagacctccatgattgccctcaccgtc
tgccagatgatcgatactgcctcccgagaggtacaggtattgattttgtcacctacaaga
gagcttgcttcacagactgagaaagtgatactggctattggtgattacataaatgtacaa
gcccatgcatgcattggtggcaagagtattggggaggatataaggaagcttgaatatgga
gttcatgtggtttctggaacgccaggcagagtctgtgacatgatcaagagaaggacatta
cgcactagggcaatcaaattattagtccttgatgaatctgatgagatgttgagccgagga
ttcaaggatcagatatacgatgtttacagatatcttccaccagagcttcaggttgtattg
atatctgcaactctgcctcatgaaattttggagataacaaacaagtttatgacagatcct
gttagaatacttgtgaagcgtgatgagttgaccttggagggcatcaaacagttctttgtt
gctgttgaaaaagaggagtggaagttcgatactctgtgcgatctctatgatactcttacc
atcacccaagctgttatcttctgcaacacgaagagaaaggtggattggttaaccgaaaag
atgcgtagctacaacttcacagtctcttcaatgcatggggacatgcctcagaaggagcga
gatgcaataatgggagagttcagatcaggaacaacccgtgttctgatcacaacagatgtt
tgggcccgaggtcttgatgttcagcaggtttctctggtcatcaattatgatcttccaaat
aatcgagagctttacattcaccggataggccgctctggtcgttttgggcgtaagggtgtg
gcgataaactttgtccgcagtgatgacatcaggattttgagagacatagagcagtattac
agtacacaaatcgacgaaatgccaatgaacgtggccgatcttatctga
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