Magnolia sinica: 131237554
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Entry
131237554 CDS
T09699
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
msin
Magnolia sinica
Pathway
msin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
131237554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msin03400
]
131237554
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
131237554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
ATG17_like
Motif
Other DBs
NCBI-GeneID:
131237554
NCBI-ProteinID:
XP_058091360
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All DBs
Position
2:125230102..125301975
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AA seq
946 aa
AA seq
DB search
MEENSPEQQQNKLPELKLDARQAQGFISFFKTLPKDERAVRFFDRRDYYTAHGDNATFIA
RTYYHTTTALRQLGSGSNGLSSVSASKNMFENIARDLLLDRTDHTLELYEGSGSNWRLSR
TGTPGNLGSFEDILFANNDMQDSPAIVALCPNFRENECTIGLGFVDMTKRTLGLVEFLDD
SRFTNLESALVSLGCKECLLPLESGKSTETRTLHDALARCGVLLTERKKSEFKSRDLVQD
LGRLVKGSIEPVRDLLSNFQYALGALGALLSYAELLADETNYGNYTVREYNLGSYMRLDS
AAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLNRWLKQPLLDVNEINCRLDLVQ
AFVEDTVLRHDLRQHLKRISDIERLIHNLGKKRGGLQHIVKLYQSSIRLPYIKSAFEQYE
GQFSSLIKKKYLDPLEELTDNDHLNKFIALVENSIDLEQLENGEYVISPGYDQSLSVLKN
EREAVEQRIHNLHKQTANDLDLPMDKALKLDKGTQFGHVFRITKKEEPKIRKKLSAHFII
LETRKDGVKFTNTKLKKLGDQYLKLLEEYTNCQKSLVAKVIQTTTTFSEVFESLATVLSE
LDVLLSFADLATSCPTPYIRPDITPSDEGDIILEGSRHPCVEAQDGVNFIPNDCTLVRGK
SWFQIITGPNMGGKSTFIRQVGVNVLMAQVGCFIPCDRASISVRDCIFARVGAGDCQLRG
VSTFMQEMLETASIMKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTLFA
THFHELTALADEEVQHDPQRRPILGVANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIH
VAEFANFPQTVVDLAREKAAELEDFSSVPVVSNDSKEKVGSKRKREHVLSPEDIARGAAR
AHQFLQEFSTLPLDQMDLKQALQQVGQMRGNLERDAVDNPWLQQFF
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaactctccagagcagcagcagaacaagctccccgaactcaaattagatgca
aggcaagctcaaggcttcatctcgttcttcaaaaccctacccaaagatgagcgggctgtt
cgcttctttgatcgccgggactattatactgctcacggtgacaatgcaactttcattgca
aggacgtattaccacactactactgctttgcggcaattgggcagtggttcaaatggtctt
tctagtgtgagtgcaagtaaaaacatgtttgaaaatattgctcgtgacctgctactggat
agaactgaccatactttggagctctatgaaggtagtggatcaaattggaggttgtcaaga
actgggacaccaggaaaccttggcagtttcgaagatatattatttgccaacaatgacatg
caggattcacctgctattgttgccctgtgtccaaattttcgtgaaaatgagtgcacaatt
gggctgggttttgttgatatgaccaagagaacccttggtttggtggaattcctcgatgat
agccgattcacgaatttggaatcagctttggtgtctcttggatgcaaggagtgcctccta
ccactagagagtggaaaatccactgaaacaaggactctgcatgatgccttagccagatgt
ggtgtacttttgacggagagaaagaaatctgaatttaagtcgagggatttggtacaggat
cttggtcggcttgttaaaggttccattgaaccggttcgagatttactttctaacttccaa
tatgcccttggggctctgggggccctgctttcttatgcagaattacttgcagatgagacc
aattatgggaattatactgtccgagagtacaatctaggcagttacatgaggttggattct
gctgccatgagggcactgaatgttctggagagcaaaacagatgcaaacaaaaattttagc
ttgtttggtctgatgaacaggacctgcactgctggcatgggaaaacgattattgaacagg
tggctgaaacaacctttgttggatgtgaatgaaatcaattgcagactcgatttggtacag
gcatttgttgaggataccgtgcttcgtcatgatttgaggcagcatttgaaaagaatttct
gacattgagcggctgattcataatcttgggaaaaagagaggtggtctgcagcatattgtg
aaactttatcagtcaagcattagacttccttacatcaaaagtgccttcgagcagtatgaa
gggcaattttcgtcgctgatcaaaaagaagtatttggatcccttagaggagttgacagac
aatgatcacttgaataagtttattgctcttgttgaaaattctattgaccttgagcaactt
gagaatggggagtacgtgatatcacctggttatgaccaaagtttatctgtactgaagaat
gagagagaagcagtggaacaacggatacacaatttgcacaaacagactgcaaatgatctt
gatcttccaatggataaggctttgaagttagacaaaggcacacaatttggacatgttttt
agaatcactaagaaggaggagccaaaaattaggaaaaagctcagtgcccattttattatc
cttgaaactcggaaggatggagtaaaatttacaaacacaaagcttaagaagctaggggat
cagtaccttaagctactcgaggagtacacaaattgccaaaaatcgcttgttgctaaagtg
attcagactacaacaactttctctgaggtgtttgagtctttagcaacggtgctttctgag
ctggatgtcttgctcagtttcgctgatttggctactagttgtccgactccctatataaga
cctgacatcactccctcggatgaaggagatataatactagaagggagtaggcacccttgt
gtggaagctcaagatggtgtgaattttataccaaatgattgcactcttgtaaggggaaaa
agttggttccaaatcatcactggccctaacatgggtgggaaatctacatttattcgacag
gttggtgtgaatgtgctgatggctcaagtcggttgtttcatcccttgtgatagagcaagc
attagcgtccgggattgcattttcgctcgtgtgggtgctggtgattgccaacttcgtggg
gtttctaccttcatgcaagaaatgcttgaaacagcatcaatcatgaaaggagctactgat
aagtctttgataattattgatgagttgggccgtggtacatctacttatgatggatttggt
ttggcttgggccatttgcgagcaccttgttgaggtgactcgagcaccaactttgtttgca
acccactttcatgaactgactgcactagctgatgaagaagttcagcatgatcctcaaagg
aggcccattctcggtgtggcaaattatcatgttggtgcacacattgatccatcaagtcgc
aagcttactatgctttacaaggtggaacctggggcttgtgatcagagttttggaattcat
gtagctgaatttgcaaactttcctcaaacagttgttgaccttgctagagagaaggctgcc
gagttagaagatttttcttctgttcctgtcgtttcaaatgattcaaaagaaaaggtggga
tctaagcgcaagcgtgaacatgtgcttagtcctgaggacattgctagaggtgcggcccgg
gcccatcaattcttgcaggagttctccactctgcctctggaccagatggacttgaagcag
gctttgcagcaagtgggtcagatgaggggtaacttggagagagatgcagtagacaatccc
tggctccagcagttcttctaa
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