Magnolia sinica: 131237803
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Entry
131237803 CDS
T09699
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131237803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131237803
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131237803
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131237803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
131237803
NCBI-ProteinID:
XP_058091782
LinkDB
All DBs
Position
2:136120699..136154744
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AA seq
671 aa
AA seq
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MSGLLNSTLNGSTSNLPDSTGRPYATSFSAQSATAPVFHHSGTMQGLHNIHGSFNVSNMP
GSLTSRNSAVGGVRSSGVQQPTGSLSSGRFASNNLPVALSQISHGSSHGHSGVPNRDGIS
VVGSPAYSSSMNGVGGSIPGIPPTSAAVGNRSAVPGLGVSPILGNAGPRITNSMGNMVGG
GNIGRSIGSGGGFTVPGLASRVNLTANSGSGGLGVQGPSRLMSGVLRQAPQMISMLGNSY
STSGGPLSQNQVQAGNNQLSSLGMLNDVNSSDNSPFDMNDFPQLTGRPSSAGGPQGQLGS
LRKQGVGVSSIVQQNQEFSIQNEDFPALPGFKGGNADFAMDMHQKEQLHDNAMSIIQSQH
YPMGRSAGYSLGGTYASHRQQQQQQHAPSVSGTGVSFTPANSQDLLHLHGSDLFPSSHGT
YHSQVQTSGPPSIGLRPLNSPNQVSGIGAYDQLMQQYQHHPQAQFRLQQMSAPTQSYRDQ
SLKSMQGAQASPDRFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTDNLHKTFGSP
WSDEPAKGEPEYVVPECYYAKQPPPLHPRYFSKFQPETLFYIFYSMPKDEAQLYAANELH
ARGWFYHRELRMWLIRVPSSELLAKTNTHERGSYHCFDPNTWETVRKDNFVLHYDMLEKR
PSLPQHQHVGH
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggctgcttaattcaaccctcaatggatcaacttcaaatcttccagactccaca
ggccggccttatgcaacgtcgttttctgctcaatctgcaacagcacccgtttttcatcat
tcaggaaccatgcaagggcttcataacattcatggaagcttcaatgtctcaaacatgcct
ggctcgctcacatcacgaaactcagcagtgggtggtgtccgttcaagtggggtacaacaa
cccacaggaagcctttctagtggacgatttgcgtcaaacaatctgcctgtggctctttct
cagatctctcatggaagttctcacggacattcaggggtcccaaacagagatggtataagt
gttgtaggaagccctgcatatagtagtagcatgaacggagttggcggttctattcctggg
attcccccaacctcagctgctgttggtaaccggagtgctgttcctggattgggagtatct
ccaattttgggaaatgcaggtcctcgaattacaaactccatggggaacatggttggtggg
ggcaacattggaaggagcataggctctggtggaggatttactgtgcctggtcttgcatca
cgtgtaaatttaactgctaacagtggatcgggaggtctcggtgtacaaggacctagcaga
ctgatgagtggtgtgcttcgacaagcaccacagatgatttctatgcttggaaattcttat
tctacatctggagggccgttatctcaaaaccaagtccaagcagggaataaccaattaagc
tccctgggaatgttaaatgatgttaactctagtgataattctccttttgacatgaatgat
ttccctcagttgactgggcgtccaagttctgctggagggcctcaaggacaattgggttct
ctgcgaaagcaaggtgttggtgttagttctatcgttcaacaaaaccaagaatttagcatc
caaaatgaagattttccagctctacctggatttaaaggtggtaatgctgattttgcaatg
gatatgcatcagaaagaacaacttcatgacaatgccatgtctataattcaatcccaacac
taccctatgggaagatctgctgggtacagcttaggtggaacttacgcatctcatcgccag
caacaacaacaacaacatgctccttcagtcagtggtactggggtttcctttacacctgca
aacagtcaagatctccttcatctacatggctctgatctattcccatcttctcatggaaca
tatcattcacaggttcagaccagtggaccacctagcattggattgcgacctctcaattct
ccaaatcaagtttctggtataggagcatatgatcaacttatgcagcagtatcaacaccac
cctcaggcccaatttcggctgcaacaaatgtcagctcctactcagtcatatagagatcag
agcctgaagtccatgcagggtgcccaagcttctcctgatcgatttggcctgttgggcttg
ttaagtgttataagaatgagcgatcctgatttgacttctcttgctttggggattgatcta
actactttagggttaaatctaaactcaacagataaccttcataaaacatttgggtctcca
tggtctgatgagcctgccaagggagaacctgagtatgtggtgcctgagtgttattatgcc
aagcaaccacctccattgcatccacggtatttctccaagttccagcccgagacactgttc
tacatcttttacagcatgccaaaagatgaggctcagttgtatgctgctaatgagctgcac
gctcgagggtggttctatcacagagaactccgtatgtggctcataagggtcccaagttca
gagcttcttgccaagacaaacacacatgagaggggatcctaccactgtttcgatcccaac
acatgggaaacagtccgcaaggacaatttcgtcctccattatgacatgttggagaagaga
ccgtccctccctcagcatcagcatgttggccattga
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