Magnolia sinica: 131237816
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Entry
131237816 CDS
T09699
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131237816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131237816
03012 Translation factors [BR:
msin03012
]
131237816
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131237816
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131237816
Translation factors [BR:
msin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131237816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
ATPase
AAA_19
T2SSE
nSTAND3
NACHT
Dicer_dimer
AAA_30
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
131237816
NCBI-ProteinID:
XP_058091802
LinkDB
All DBs
Position
2:complement(136399388..136437965)
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AA seq
1208 aa
AA seq
DB search
MPSYSPFLRCFLLRPNTSPLFAMSLRLPSLRPNPKSPILPFPSTVRFGGTYCITQRRRRP
SAIVAAASSPSDVSAQTRSLEFNWREIQGGALNSNDDFMFLKQPTRQFGRYAYDDYSEDE
SDVDSSSSSSSSQLGASTVDNVDEWKWKLSMLVRNKNEQEIVSREKKDRRDYEQLAAMAT
RMGLYCRQYQRVVVFSKVPLPNYRSDLDDKRPQREVSLPASLHRGVDDLLREHLARKPSD
KGSFPGITFSGSGSNGRNATSGGLFEQQEPQKPVSVVMERILRRKSLQLRDQQQNWQESP
EGQKMQEFRRSLPAYKEKDALLTAISQNQVVVVSGETGCGKTTQLPQYILESEIEADRGA
ACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRR
LLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYF
GGAPMIHIPGFTYPVRTHFLENFLEVTGYRLTTYNQIDDYGQEKKWRMQKQVLSKRKSQI
SSVVEDALEAADFREYSLRTRESLSCWNPDSIGFNLIENVLCHICRQERPGAVLVFMTGW
DDINSLKEQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPENGVRKIVLATNMAETS
ITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPR
CVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQSPELLSVQNAVEYLKII
GALDENENLTVLGRHLSMLPVEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFLMPFDK
KDLAESAKSQFSARDYSDHLALVRAYDGWKDAEREQSGYDYCWRNFLSSQTLKAIDSLRK
QFLFLLKDTGLVDANSGMYNSWSHDEHLIRAIICAGLYPGISSVVNKQKSISLKTMEDGQ
VLLYSNSVNAREQKIPYPWLVFNEKVKVNSVFLRDSTAVSDSVLLLFGGEICQGGLDGHL
KMLDGYLEFFMKPSLSETYLKLKRELEELIQQKLLDAKTDIHVNEQLLSAVRLLVSEDPC
EGKFVFGRQELKPSKSPLPLTRSSTGSGGDNPKSHLQTLLVRAGHEAPRYKTKQLKNNQF
RAMAEFNGMQFVGQPCNSKKLAEKDAAAEAVEWLTGETTSSHKEVDHTLMLLKKSGNKKQ
QSKRKIRR
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgcccagctactccccatttctacgctgctttctcctcagacccaacacctctcctctc
ttcgctatgtctctccgccttccttctctccgcccaaaccctaaaagccctatattgccg
ttcccctccaccgtccgtttcggtgggacctactgcatcacccagcgccgccgtcgaccc
tctgccattgttgctgctgcctcctctccttcggacgtctcggcgcagacccggtcgctc
gaattcaattggcgggaaatccagggcggggccttgaattcaaatgatgatttcatgttc
ctgaagcagccgaccaggcaatttggacggtatgcttacgatgattactccgaggatgag
tctgatgtggattcttcgtcgtcgtcatcgtcgtcacagttgggtgcttccaccgttgat
aatgttgatgagtggaagtggaagttaagcatgcttgttcgcaacaagaatgagcaagag
atagtgtcaagggagaaaaaagacagacgtgattatgagcaacttgcagcgatggccacc
agaatgggtttgtattgccgtcaatatcaaagggtcgttgtgtttagtaaggtcccgcta
ccaaattacagatctgatctggatgataagcgccctcagagggaggtgagccttcctgcc
agcttgcacagaggcgttgatgatttacttagagaacaccttgctcgaaagcctagtgac
aaaggaagctttcctggtattaccttttcgggatctggcagcaatggcagaaatgctaca
agtggagggctttttgagcaacaagagcctcaaaaaccagttagtgttgtcatggagaga
atcctaaggcggaagagtttgcagctgcgtgatcaacagcagaattggcaggaatctcct
gaagggcaaaagatgcaagagtttcgccgaagtcttcctgcgtacaaagaaaaggatgca
ttattaacggccatttcacaaaatcaggttgtcgttgtctcaggtgaaactggttgtggt
aagacaacacagcttcctcagtacatcctagaatctgagatagaagctgaccgtggagca
gcctgtagtataatttgcactcagccaagaagaatatctgctatggctgtttccgaaaga
gttgctgctgagagaggagagaaattgggtgaatctgttggttataaagttcggctagag
gggatgaaagggagggatactcgtcttcttttttgcaccacaggcattttattgaggaga
ttactagttgatagaaatctgaaaggcataactcatgttattgtggatgaaatccatgaa
cgagggatgaatgaggattttcttctcattgtgctgaaagacctccttccccgtcgacca
gaattgaggcttattttgatgagtgcaaccctaaacgctgaacttttctcatcctacttc
ggtggggctccaatgattcacatcccaggttttacatatccagttcgaactcattttctg
gagaattttctggaagttactggttataggttgactacatacaatcagattgatgattat
gggcaagaaaagaagtggagaatgcagaaacaggtccttagcaaaaggaagagccaaatc
tcgtctgttgtcgaggatgcactcgaagctgctgattttagggagtatagcttgaggact
cgtgagtctttatcctgttggaatccagattctatcggtttcaacctcatagagaatgtt
ttatgccacatatgtagacaagaaaggcctggtgctgttctggtatttatgactgggtgg
gatgacataaattctctgaaggagcagctccaagctcatcctcttttgggagatccaagt
agggttttgttgcttgcatgccatggttctatggccagctcagagcagaggttgatattt
gataaacctgaaaatggagtgcggaaaattgtgcttgctaccaacatggctgagacaagc
attaccatcaatgatgttgtttttgttgttgactgcgggaaggcaaaagagacatcttat
gatgcattgaacaatactccttgtttgcttccttcttggatctctaaggctgctgctcga
caaagaagaggaagagctggtcgtgttcaacctggcgagtgttaccatctctatcccaga
tgtgtgtatgatgcatttgcagattaccagttgccggaacttctaaggacacctctacaa
tctctttgcttgcaaattaagagtctgcagcttggaagcatttcagagttcttatctagg
gctttacaatcgcctgaactactgtcggtccaaaatgctgttgaatatctgaaaatcatt
ggggctttggatgagaatgaaaatcttacggttctagggcgccacttatcaatgctccct
gtggaacctaaacttggaaagatgcttatattgggggccatattcaattgcctcgatcct
atattaacagttgttgctggtctaagtgtcagagatccatttttaatgccattcgacaag
aaggatcttgctgaatctgcaaaatctcaattttctgctcgagattatagtgaccatctg
gctttggtccgagcctacgacggttggaaagatgctgaaagggagcaatccggatacgat
tattgctggaggaattttctctcatcacaaacactaaaagccattgattccctccgaaag
caattcctttttttgcttaaagatactggtctggttgatgccaattctggcatgtacaat
tcatggagccatgatgaacacctcatccgagccatcatatgtgccggtctctatcctgga
atttcctcagtcgtgaataagcagaaatcgatatcattaaagacaatggaggatggccag
gtccttctttactctaactcagtcaatgcacgggagcagaaaattccatacccatggcta
gtcttcaacgagaaggtgaaagtgaactctgtgtttctccgggattcaacagctgtatct
gattcggtactgcttctatttggcggagagatctgtcaagggggacttgatgggcacttg
aaaatgttagatggatacttggagttcttcatgaagccttcactctctgaaacgtaccta
aagctaaaaagagagcttgaggaactaattcaacaaaagcttcttgatgccaaaacagac
atccacgtcaatgaacagctcctatcagcggtgcggttgcttgtatcagaggacccgtgt
gaaggcaagtttgtctttggccggcaggagctaaaaccctcgaaatcaccattgccactt
acaagaagcagcacgggctctgggggcgacaatcccaagagccatctgcaaacgttgctt
gtcagagctggacacgaagctccaaggtacaagacaaagcagctcaagaacaaccaattc
agagccatggctgagtttaatgggatgcagtttgtcgggcagccgtgtaacagcaaaaag
cttgcagagaaagatgctgcagccgaagctgtggaatggctgacgggtgagactacatca
agccacaaagaggttgaccatacgttgatgctgctgaaaaagagtggcaacaagaaacag
caaagcaagcgtaaaatccgaaggtag
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