Magnolia sinica: 131239300
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Entry
131239300 CDS
T09699
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
msin
Magnolia sinica
Pathway
msin03440
Homologous recombination
msin03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
131239300
03460 Fanconi anemia pathway
131239300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msin03032
]
131239300
03400 DNA repair and recombination proteins [BR:
msin03400
]
131239300
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
131239300
DNA replication proteins [BR:
msin03032
]
Eukaryotic type
DNA Topoisomerases
131239300
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
131239300
FA (Fanconi anemia) pathway
131239300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-CCHC
Toprim_4
C1_2
Motif
Other DBs
NCBI-GeneID:
131239300
NCBI-ProteinID:
XP_058092917
LinkDB
All DBs
Position
3:3158571..3191870
Genome browser
AA seq
915 aa
AA seq
DB search
MSGGRPIRVLNVAEKPSVAKAVAGILSRNHGLRTRDGRSRYNRIFEFDYTIRSQPCRMLV
TSVTGHLMELDFDDRYRKWHSCDPADLYSAPVRKNVPQDKLDIKRTLEDEARQCQWLVLW
LDCDREGENIAFEVVEVCTAANRHLDIWRARFSALIDREIHESVQNLVRPNELFADAVDA
RQEIDLRIGASFTRFQTMLLKDAFVLDFVAGDRNLVLSYGPCQFPTLGFVVERYWEIQAH
EPEEFWTINCSHTSDDGTATFNWMRGHLFDYTCAVIIYEMCVEEPTATVAKVRNQEKLKY
PPYPLSTIELQKRASRYFRMSSEHTMKVAEDLYQSGFISYPRTETDCFSVNTDLHAIVRE
QQGHPSWGSYAQRLLDPDAGLWRNPGSGGHDDKAHPPIHPTKFSAGESGWSQDHNRLYEL
VVRHFLACVSQPAVGAETTVEIDIAGELFSSSGRVIVAKNYLDVYRFESWGGSMIPNYTF
GQQFVPTTLTLDSGVTRPPPLLSESDLLSCMDKAGIGTDATMHDHIKKLLDRFYATKDAN
TRFSPTNLGEALVMGYDDMGYELWKPYLRAMMECDMKAVSLGQKRKLEVLETCLQQMKAC
FLDARLKKVKLLEAMEIFFERSNRPGGDEQHAVGETVRSCSLCRESDMVLKRRPDGTFMV
GCLRFPHCRNVVWLPGAVSEAAVTTHVCSSCTPGPVFKIQFKFRRLEIPPNYNVDHLGCV
GGCDETLKELIEICGTGPRIPVSTPARGRRPMEPSNNAQGGNTRQASCVHCSQRGHSSND
CPSQVSNTRGNRRGRNLNSENGTDPVVCNACGTPCVLRTANTTANRGRKFYTCQSQECNF
FVWEDTIDNNGVGRGGGPHGNSPTRRGGRGRGRRGAHNAADATFVTATGEPVSGRRCFAC
GDPSHFANVCPNRGL
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcggtcgccccatccgcgtcctgaacgtggccgagaagccgtccgtcgccaag
gcagtggctgggatcctctctcgcaaccacggtctccgcacccgagatggacggtcccgc
tacaaccgcatcttcgagttcgactacacgatccggtcccagccctgccgcatgctcgtc
acctccgtcaccggccacctcatggagctcgacttcgacgaccgctaccgcaagtggcat
tcctgcgatcccgccgacctctactccgcacctgtccgcaagaacgtcccgcaggacaag
ttggacatcaagaggactttggaggatgaagccaggcagtgtcagtggcttgtattgtgg
cttgattgcgatagggaaggtgagaatattgcatttgaagtggtagaggtctgtacagct
gcaaatcgtcatctagacatatggagggctcggttctctgcattgattgacagggaaatc
catgagtctgtgcagaatcttgttcgcccaaatgaactgtttgcggatgcagtggatgct
aggcaggaaattgacctccgtattggtgcctccttcactaggtttcagacaatgcttttg
aaagatgcatttgttctagattttgttgcaggtgataggaatctcgttctaagttatggt
ccttgtcagttcccaacactcgggtttgtcgtggaaaggtactgggaaatacaggcgcac
gagcctgaagagttctggacaatcaattgttctcatacctcagatgatggaactgccacc
ttcaattggatgcgtgggcacttgtttgactacacttgtgctgtcataatttatgaaatg
tgtgttgaagaacccactgcaactgtcgctaaagtgagaaatcaggagaagcttaagtat
cccccatatccattgagtactattgagctccaaaaacgagcgtcccggtacttccggatg
agttctgaacacactatgaaggtggcagaagatctttatcaaagtggattcatcagttat
cctcgtacagagactgactgcttttcagtgaacacggatttgcatgcaattgtgcgggaa
caacaagggcatccttcatggggttcgtatgcgcaacggcttctggatcctgatgcaggg
ctgtggagaaaccctggtagtggtgggcatgatgacaaagcgcacccacccattcatcca
acaaaattttctgctggagaatctggatggagccaagaccacaataggttgtatgagctg
gttgttcgccacttccttgcctgtgtctcacagccagctgtaggggctgaaactactgtc
gaaattgacattgctggcgaattattttcttcctctgggcgtgtgatagtagcaaaaaat
tacttggatgtatatagatttgaatcttggggtggttcaatgatcccgaattacaccttc
ggtcaacagtttgttccaacgacattaactcttgattcaggtgttacaagaccaccccct
cttttaagtgaatccgatctgctaagttgtatggacaaggccggtattggcaccgatgca
acgatgcacgatcacataaaaaagctacttgatcggttctatgctactaaagatgcaaac
actcgtttctcaccaacaaatctgggagaggcactagtgatgggatatgatgacatgggg
tatgagctctggaaaccatatcttagagctatgatggagtgcgacatgaaagcagttagt
ctgggccaaaagagaaaattggaagttttggagacatgcttgcagcagatgaaagcctgc
tttttagatgctaggttgaagaaagtgaaactcttggaagcgatggagattttctttgaa
aggtctaataggcctggtggagatgagcagcatgctgttggagagactgtccggtcctgt
agtttgtgtcgcgaatctgatatggttctgaagcgaaggccggatggtacttttatggtt
ggatgcttgcgctttccacattgtcggaatgtcgtttggcttccaggagctgtatcagaa
gcagccgtcaccacccatgtttgcagctcttgcactccaggtcctgttttcaagattcaa
ttcaagtttcgtcgcttggagataccaccgaactacaatgttgaccatttgggttgtgtt
ggtggctgtgacgagacgttgaaagaattgatagaaatttgcggaaccggcccccgcatt
cctgttagcacgccagcaagagggcggcgccctatggaaccttcaaataatgcacaggga
gggaacacaaggcaggctagttgtgtacattgcagtcaaagggggcattcttcaaatgac
tgcccttcccaggtttccaacacacgaggcaatcgacgcggcagaaacctaaactcagaa
aatggaacggatcctgttgtgtgtaatgcatgtgggacaccttgcgttttgcgaaccgct
aatacaaccgctaataggggaagaaagttctacacgtgccaatcgcaggagtgcaatttc
tttgtatgggaggataccatcgacaacaatggtgtgggcagaggaggtgggccgcatggt
aacagccccaccaggagaggtggacgtggcagagggcgcaggggagcacacaatgcagca
gatgcgacctttgtaacagcaacaggcgagcctgtatctggtcggaggtgtttcgcttgt
ggtgatccctcacattttgcaaatgtctgcccaaaccgaggtttgtga
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