Magnolia sinica: 131239378
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Entry
131239378 CDS
T09699
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
msin
Magnolia sinica
Pathway
msin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131239378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msin03021
]
131239378
03019 Messenger RNA biogenesis [BR:
msin03019
]
131239378
Transcription machinery [BR:
msin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131239378
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
131239378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf_UBZ
Pcf11_C
zf-C2H2_4
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
131239378
NCBI-ProteinID:
XP_058093047
LinkDB
All DBs
Position
1:complement(10420987..10442134)
Genome browser
AA seq
1048 aa
AA seq
DB search
MEESRLRQNPRNPAFLSDLSSQKPSPPILERFRSLLKQIQDQIRPTSSDGDDDDTLPRPE
MDEIVRLYEDVLSELTYNSKPIITDLTIIAGEQKEYGEGIADAICRRIVEVPAEQKLPSL
YLLDSIVKNIGRNYVRYFAARLSEVFCEAYKQVHPSQYPSMRHLFGTWSTVFPPSILRKI
ESELQFSSAVSHQTSSWTASRPSESPSPRPAHGIHVNPKYLEARRQFEHSTVMHETDPSD
NARIADFGGKGMERNASSSPKGWSGASPKFHDVQNERGVSSSLQAYGRKPTIGYIEHEFE
HAEALLPPQTAARSASLVTGSESKLAPPKSKGLRASSATGIGQTRPLSPRSNGFARDISP
GIVERASPSHSGFLSRLGRVNDRDGERSESWEGNWSDGGSQQVETSSPYALRNGYEQRPP
RALIDAYGNYRGKDTLQEKLSTVERLDVNGNSKKTNRKWQNIEEEEYDWEDMSPTPADRS
RGNDLIASDFRASLKRPNAALLEPEFRSNCHSQAQLSQLGRESMTTKSLSTVTQNGSLPH
FEAPYQTREPWNLSHRFSQSSNPYLTPQSRAALQMPFSASGMVPSAGQKISPLDSKLEAE
APVWSFPTIQSRMGYSNPGTSNLAVLSSAAPASTMEKHLAQRPHSPPITQHMRPPLHNSL
PPPLVHSLPHRAQFDLLDVNRLSVNHGPNKSLILSRPQFDAADRTSLNSSTLLQFPQQQA
GLVSLIRPPSQEHAALPPAPASHLVAQTLNHGPMQGQGSIRNAIFPNPFPGISSSSVTIH
SIPGTSFHVPGGALPPLPPGPPPVSSQMGPTSQNTGPIISNHPPGSAFSGLIGSLMAQGL
ISLTAPAAPQDSVGLEFNSELLKVRHESAINALYAELPRQCTTCGQRFKSQEEHSNHMDW
HVTKNRMSKNRKQKPPSRKWFVSAKEWFSGAEALGTDSVPGFLPTEAVVEKREDEETAVP
ADENQNVCALCGEPFDDFYSDETEEWMYKGAVYLNSQDGYTEVMDRSQLGPIVHAKCRSE
STAVPTEDFEQNEEGLNEEGIQRKRMRI
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatcccgcctcagacaaaaccctagaaaccctgctttcctctccgacctctct
tcccaaaagccttcgcctcccattctcgaacgcttccgatctctcctgaagcagatccag
gatcagatcaggcccacatcgtccgacggcgacgatgacgacaccctgccgcggcccgag
atggatgagatcgtgcggctctacgaggacgtcctctcggagctcacttacaattcgaag
ccgatcatcacggacctcacgatcatcgccggggagcagaaggagtacggagagggcatt
gcggacgctatctgccgtcggatcgtcgaggtcccagctgagcaaaaactgccatctttg
tatcttctggatagtattgtaaagaacattggtcgaaactatgtgaggtactttgctgct
cggctgtctgaggtgttttgtgaggcatacaagcaagttcaccctagtcaatatccttct
atgcgtcacctatttgggacgtggtctacggtgttccctccttcaatactgcgcaaaatt
gagtctgaactacaattttcttcagctgtgagtcatcagacatctagctggacagcttca
agaccttctgaatcaccatctccccgtccagctcatggcattcacgtcaatccaaaatac
ttggaggcacggcgtcaatttgaacattcaacggtgatgcatgaaactgatcccagcgat
aatgcacgtatagcagattttggaggaaagggaatggagagaaatgcttcatcgagcccc
aaaggatggtctggagcttctccaaaatttcatgatgttcaaaatgaaaggggagtttct
tcaagcctacaagcctatgggcgaaaacccaccattggatatattgagcatgaatttgag
catgctgaggcgctgctgcctccacagactgcagcaaggagtgcatctttagtaactgga
tctgagagtaaacttgctcctccaaaaagtaaaggtttaagggcttcatcggctacaggg
atcgggcagacaaggcctttatcaccacgaagcaatgggttcgcaagggatatttctcct
ggaatcgttgaaagggcttctccatctcattcaggatttttatctagacttggcagagtg
aatgacagggatggggagaggagtgagtcatgggaggggaactggtctgatggtggatcc
caacaagttgaaacttcgagtccatatgcccttagaaatggatatgagcagcgaccgccg
agggcattaattgatgcttatggaaattacagaggaaaagacaccttacaagagaaactt
tcaacggttgaacggcttgatgtaaatggaaacagtaagaaaaccaacagaaaatggcaa
aatattgaagaagaagagtacgattgggaggatatgagcccaacaccagcagatcgtagc
aggggcaatgatcttattgcatctgatttccgggccagtttaaagagaccaaatgccgca
cttttggaacctgaattcaggagcaactgtcatagccaggctcagctttctcagcttggt
cgtgaatcaatgactacgaagtctcttagtacagtaacccaaaatgggtcattgcctcat
tttgaggctccttatcaaactcgggagccttggaatttatcacaccgtttttcacaatct
tcaaacccgtatcttaccccacaatcaagagcagctctacaaatgcccttttctgcaagt
ggaatggttccatcagctggtcagaaaatctctcctcttgatagcaaactagaagctgaa
gctccggtttggagcttcccaaccattcagtcgaggatgggctattcaaaccctggcacc
tcaaacttggcggtcctgtcgtctgctgcaccagcatcaacaatggagaagcatttggca
caaaggccacattcacctcccatcacacaacacatgcggcctccattgcataattctctt
cctccacctttggtccatagccttccacaccgtgcacagtttgatttgttggatgttaac
aggttatctgttaatcatggcccaaataagtctttgattttgtctcggccacaatttgat
gctgctgataggacaagcctaaattcttcaacgttgctccaatttcctcagcagcaggct
ggtttggtttctttgattcggccaccaagtcaggaacatgctgctcttcctcctgcccca
gcatctcatttagtggcacaaactctaaatcatggacctatgcaaggacagggttccatt
cggaatgcaatctttcccaacccatttcctggaatatcttcttcatctgtaacgatccat
agtataccaggtacctctttccatgtaccaggtggggctttacctccattacctccgggg
ccgcctcctgtctcatcacagatggggcccacatctcaaaatacagggcccatcatctct
aatcatcctcctgggagtgcattttcgggtctgattggttctctcatggcccaaggtttg
atctcattaacagcgccagctgccccacaggattctgtaggactggagtttaattcagaa
cttcttaaggtgcgtcatgagtctgcaataaatgctttatatgctgagcttccacgacaa
tgcacaacatgtggacagcgtttcaagtcccaagaagagcatagcaatcatatggattgg
catgttactaagaatcgtatgtctaaaaaccgtaagcaaaagcccccctcgcggaaatgg
ttcgtaagtgccaaagaatggtttagtggtgctgaggctttgggaactgattctgttcct
ggctttttgccaactgaagcggttgtagaaaagagggaggatgaagaaacggctgttcct
gcagatgaaaatcagaatgtgtgtgcactgtgtggggagccttttgatgatttttatagt
gatgagactgaggagtggatgtataaaggggctgtgtacttgaactcacaagatggatat
acagaagtcatggataggtcgcagttgggtcctatcgtgcatgccaagtgtagatcagag
tctactgcagttcctactgaagattttgaacaaaatgaggagggacttaatgaagagggt
atacaaagaaaaaggatgcggatttag
DBGET
integrated database retrieval system
