Magnolia sinica: 131239559
Help
Entry
131239559 CDS
T09699
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
msin
Magnolia sinica
Pathway
msin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131239559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msin03021
]
131239559
03041 Spliceosome [BR:
msin03041
]
131239559
03036 Chromosome and associated proteins [BR:
msin03036
]
131239559
Transcription machinery [BR:
msin03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
131239559
Spliceosome [BR:
msin03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
131239559
Complex B
131239559
Complex C
U2 SnRNP specific factors
131239559
Chromosome and associated proteins [BR:
msin03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
131239559
TFTC complex
131239559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
131239559
NCBI-ProteinID:
XP_058093306
LinkDB
All DBs
Position
3:complement(13446327..13469002)
Genome browser
AA seq
1214 aa
AA seq
DB search
MYLYNLTLQQATGVVCATNGNFVGGKSQEIVVARGKVLDLLRPDDSGKIQTILSVDVFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIIILEYNKEKNVFNKIHQETFGKSGCRRIVPGQYL
AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSIAGVDCGFDNPI
FAAIELDYSEADQDSTGQAANEAQKHLTFYELDLGLNHVSRKWSEPIDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRVDLPNERGVLIVSAATHRQKTMFFFLLQ
SEYGDIFKVTLEHENDRVSELKIKYFDTIPVTAAMCVMKTGFLFAASEFGNHALYQFKAI
GDGADIESSSATLMETEEGFQPVFFQPRGLKNLVRIDQVESLMPVMDMKVINLFEEETPQ
IFTLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVSDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLLGDDSLMQVHPNGIRHIREDGRINEWKTPGKK
TIVKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVEKHEMPGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLLLEFQASVGGEDGADHPASIFL
NAGLQNGVLFRTVVDMVTGQLSDTRSRFLGLRAPKLFSAIVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RKFVLHPKRKLLVIIESDQGAFTAEEREAARKECLEAAGMGENGNANDEQMANGGEEEEK
DDPLSDEQYGYPKSESSKWVSCIRVLDPRSANTTCLLELQENEAAFSVCMVNFHDKEYGT
LLAVGTAKALQFWPKRSLSGGFIHIYRFVEDGKSLELLHKTPVEGIPLALCQFQGRLLAG
IGPILRLYDLGKRKLLRKCENKLFPNTIISIHTYRDRIYVGDIQESFHYCKYRRDENQLY
IFADDSVPRWLTASYHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGKL
NGAPNKVEEIVQFHVGDVVTCLQKASLIPGGGECIIYGTVMGSLGALLAFTSREDVDFFS
HLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPPDLQRKIADELDRTPG
EILKKLEDVRNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacaacctcactctccagcaggctaccggcgtcgtatgcgccaccaacggc
aatttcgtcggtgggaagtcgcaagagatcgtcgtggcccgcggcaaggtcctcgatctc
ctccgtccagatgacagcggcaagatccagacgatcctgtctgttgatgtcttcggcgcc
atccgctcccttgcccagttccgccttaccggctcccagaaggactacatcgtcgtcggc
tctgactctggtaggattataattttggaatacaacaaggaaaaaaacgtctttaataag
atccatcaggaaaccttcgggaagtcgggatgccgtcggattgtcccgggacagtacctg
gccgtcgaccccaagggccgtgctgtcatgatcggtgcctgtgagaagcagaagctcgtc
tatgtactgaaccgtgacactgcagcccgcctcactatctcgtccccactggaggcccac
aagtcccacaccatcgtgtactcaattgccggcgtcgactgtgggttcgacaacccgata
ttcgcagcgattgagcttgactactcagaggccgatcaggactcaactggccaggctgcg
aacgaggcccagaagcacctcactttctatgagcttgatctgggtctcaaccatgtgtcg
cgtaagtggtcggagccgattgacaatggagcgaacatgctcgtgacggtcccaggcggt
ggggatgggcccagtggggttcttgtctgcgctgagaactttgttatctacaagaaccag
ggccacccagatgtccgtgctgtcatcccaaggagggttgatcttcccaatgaacgtggg
gttctgattgtctctgctgcgactcacaggcagaaaaccatgttcttctttctactacaa
tctgagtacggtgacatattcaaggtcacattagaacacgagaatgatcgggtttcagaa
ttgaagataaagtactttgatacaatccctgttacagctgcaatgtgtgtcatgaaaaca
ggattcctatttgctgcatcggaatttgggaaccatgcactgtaccagttcaaggcgatt
ggggatggggccgacatagaatcctcctctgccacattgatggagacggaagaaggcttc
cagcctgttttcttccagccacgtgggcttaaaaatctggtccggattgaccaggtcgag
agcctaatgcccgtcatggacatgaaagtcatcaatctgtttgaagaagagacgccacag
atcttcacactttgcggacgggggccacgttcatcgttgcggatactgcggcctggcctg
gcgatcagtgaaatggctgtctcgcagcttccaggtgttccaagtgctgtttggacagtg
aagaaaaacgtgagtgatgagtttgatgcttacattgttgtctcatttgcaaacgcaaca
cttgtgctttcgattggagagacagttgaggaagtcagcgacagcgggttccttgacacc
accccgtcgcttgcagtctctttgttaggcgatgattcgctgatgcaggtccacccgaac
gggatccgccatatacgagaggacgggcgtatcaacgagtggaagactccagggaagaag
acaattgtgaaggtggggtcgaacagattgcaggtcgtgattgctttgagtgggggcgag
ctcatctacttcgagatggacatgacgggccagctgatggaagttgagaaacatgagatg
ccaggggacgtagcgtgtttggacattgctccagtcccagaaggacggcagagatcacga
tttcttgcagtcggatcgtatgataacacgatccggattctgtcattggacccggatgat
tgtatgcagattttgagtgtgcagagtgtgtcgtcgccaccagaatcactcctcttgctt
gaatttcaggcatcggtcggtggagaggatggcgctgatcacccagcaagcatttttctc
aatgcaggattgcagaatggggtccttttcaggaccgttgttgatatggtaacaggccag
ctttctgatactcgttctaggttcttgggtttgcgggccccaaagctgttctctgcaata
gtgaggggccggcgggcgatgctttgcttgtcgagcaggccttggcttgggtatattcac
caagggcatttcttactgacaccactctcgtacgagacacttgaatatgctgcatcgttt
tcatctgaccagtgtgcagaaggtgtggtcgctgttgcgggggatgctctgcgggttttc
acgattgaacggttaggggagacttttaatgagacggcaattccactgaggtatacaccg
aggaagtttgtgcttcatccaaagcggaagcttttagtcattatagagagcgatcaggga
gccttcactgcagaagagagggaagctgcaaggaaggaatgcttggaagctgccgggatg
ggagagaatggaaatgcgaatgacgagcagatggcgaatggtggggaagaagaggagaag
gatgatcctctttcagatgagcagtatggttatccgaagtctgagtcatccaaatgggtg
tcttgcattcgagtccttgacccgaggtcagcaaacactacatgcctgctcgagcttcaa
gagaatgaggcggcttttagtgtatgtatggtgaattttcatgataaggaatatgggact
cttttggctgttgggacggcgaaggcattgcagttttggcccaagaggagtttgtcgggt
gggtttattcatatatataggtttgtggaggatggaaaatcacttgagcttctgcacaag
acgccagtagaaggcatcccacttgcgttgtgccagttccagggaaggttacttgctggg
attggacccattcttagattatacgatttggggaagaggaaattgctgagaaaatgtgag
aataagctcttccctaatacgattatctctattcacacctatcgtgaccggatatatgtt
ggcgacatccaagagtcattccattattgcaagtataggcgagatgaaaaccagctgtat
atattcgcagatgactccgtgcccagatggctcacagcatcataccacatagattttgac
accatggcaggtgcagacaagtttgggaatgtgtactttgtgcggctgccgcaggatgtg
tcagatgagatcgaagaggatccaacaggcggtaagataaagtgggagcaggggaagctg
aatggtgctccgaataaggtagaggagattgtgcaattccatgtgggtgacgtcgttacc
tgcttgcagaaggcatcgctcataccgggaggcggtgagtgcatcatttacgggactgtg
atgggaagcttgggggcgttgcttgctttcacctccagggaggatgttgatttcttttcg
catttggagatgcatatgaggcaggagcacccccctttgtgcggaagggaccacatggcc
tacagatctgcttattttccggtcaaggatgtgatcgatggcgatctttgtgaacagttc
ccaaccttgccgcctgatttgcagaggaagattgcggatgaactggatagaactcctggt
gagatattgaagaaactagaagatgtcaggaataagattatctaa
DBGET
integrated database retrieval system
