Magnolia sinica: 131239770
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Entry
131239770 CDS
T09699
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131239770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131239770
Enzymes [BR:
msin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
131239770
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131239770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RRM_PARP14_2
Motif
Other DBs
NCBI-GeneID:
131239770
NCBI-ProteinID:
XP_058093616
LinkDB
All DBs
Position
3:complement(30353879..30373327)
Genome browser
AA seq
680 aa
AA seq
DB search
MTRSLYLFRYQYRHHYPSSPMARSLQRRRRLLSSFYTTATATDTATATATASATASAKHH
RRGGGGGSVSVMKEVTKANFAAALEEIKEHIRDSHFIAVSSQKTGGAFSSGSGAAGAAPW
RHRIFPLDTPETAYLKAKDAAERFELLQFAVCPFRIQGSKIIAFPYNFHLFPRDELNIGM
PSYSFSCQTSCLTSMAREGFDFNACIYDGISYLSRVQESAAKGRIQNPIPSICTMKSSSS
PSVADSIFMKRIKSRVQHWRDACKDSTKTTDEALVRSLRKLILGGEFYGSRPCMNIDVST
DRQVLLVAEILSEFSDDLVPLMIPDKGGEPKAVRVVLTSSEEDRNLLKSELQHLEEEQDK
QVRGFREVIDVITASCKPVVAYNCLTEFTFIHSKFIAPLPPSVEEFMCSLRMVFSNILDL
NHLLKEVGPLKKAKNLPAAVSYLKRQFFIPLDMEIPHQAHQGNLGKNHNLLKITHLFAKL
CSILKITPACETVASHRTAALEDYANVFYPCCSSSLDPLDGDVGAWAAAYPAKKLSTENL
VFLWGFRSGISTRLLKGLLYGTHKAFSEDFEVRLVDKSSAVVVFQRPGSAESFLKDMQGS
SGAVGVSALREMISEGLKAAGYEAYRRVCRLGFWEASLADSLDRALSEQQPTCALSMDYC
IKDTSDIFWSNDSMIQLNDL
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgcagcttgtatctatttcggtatcagtatcggcaccactatccatcctcacca
atggcgcgcagcttgcagaggagaagacggcttctctcttccttctacacgaccgccacc
gccactgacaccgccaccgccactgccactgccagtgccaccgccagcgcaaagcatcat
cgacgcggtggtggcggtggcagtgtgtcggtaatgaaagaagtgaccaaggccaacttc
gccgctgcccttgaagagataaaggaacacatccgcgattcccatttcatcgcggtctcc
tctcagaagacaggaggagccttctcttcgggcagtggtgctgctggtgctgccccatgg
cgtcaccgcatcttccccctcgacactcccgagaccgcatatctcaaggccaaagatgct
gctgagcggtttgagcttctacagtttgctgtttgcccttttcggatccaagggtccaag
atcatcgcctttccgtacaattttcatttgttccccagagatgagctgaatataggcatg
ccgtcgtacagcttttcatgtcaaacatcatgtttgacatcaatggcacgagaaggtttt
gatttcaacgcctgcatatatgatggcatttcgtacctatccagggtgcaggaatccgca
gcaaaaggtcggattcaaaatccaatccctagtatctgtacaatgaaatcctcttcaagt
ccatctgtggctgattcaattttcatgaaaaggattaagtcacgagtacagcactggaga
gatgcttgtaaagactcaaccaagacgaccgatgaggctttagtgagatccctgaggaaa
cttattttgggaggtgaattctatggatcaaggccgtgcatgaatatagatgtttctact
gatcgccaagtgcttctggttgcagagatcttgagtgaattctctgatgaccttgtacct
ttaatgatcccagacaagggcggggaacctaaggcagtacgagttgtgctgacaagttca
gaggaggacaggaatcttctcaagagtgagcttcagcatctcgaagaggaacaagataag
caagtgcgcggttttcgagaagtcatagatgtgattacggcttcatgcaagccagttgtt
gcctacaactgccttactgagttcacattcattcattcgaaatttatcgctcccctgcct
ccaagcgtggaagagttcatgtgctccttacgcatggttttctccaacatcctggatctt
aaccatttgttgaaggaagttggccctctgaaaaaggcaaaaaatttgcctgctgctgtt
agctacttgaagagacagttcttcatacccttggatatggaaattccacaccaagcacac
caagggaatctaggaaagaaccataatcttctaaagataacacatctatttgccaagctc
tgttctatactgaagatcactcctgcttgtgaaactgtggctagccatcgcactgcagct
ttggaagactatgcgaacgtattctatccctgctgttcttctagccttgacccattggat
ggagatgttggagcatgggcggcggcatatcctgcgaagaaactgagtactgagaacttg
gtttttttgtggggatttaggagtgggatttccaccagattgctgaaaggccttctttat
ggaactcacaaagcattttctgaggactttgaggtgcgcttggtggacaagagcagtgct
gttgtggttttccagaggccaggttctgctgagtcattcctcaaggacatgcagggttct
tctggagcagttggtgtgagtgctctacgggagatgatctcggaagggctaaaagcagca
ggctacgaagcatataggagggtctgcagattgggtttctgggaggcaagtttggctgat
tcattggacagagccttgtctgagcagcagcccacatgtgctctttcaatggattattgt
ataaaggacacatcggatatattctggagcaacgactcgatgatccaactgaatgatctt
tga
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